Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq171037 122 2e-22 seq32333 116 9e-21 seq157544 111 4e-19 seq270304 87.8 4e-12 >seq171037 Length=1136 Score = 122 bits (134), Expect = 2e-22 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||||||||| |||||||| || || |||||||| | || || || |||||| Sbjct 772 AGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCT 713 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || |||||||| || || || | | || |||||||| ||| Sbjct 712 TCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCT 653 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || || |||||| |||| ||| || |||||||||||||| Sbjct 652 TGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGA---TTCCACTTCAAGAGTAATT 596 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || || || || || || || || || | ||||||||| Sbjct 595 GTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557 >seq32333 Length=4216 Score = 116 bits (128), Expect = 9e-21 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||||||||| |||||||| || || |||||||| | || || || |||||| Sbjct 4004 AGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCT 4063 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || |||||||| || || || | | || |||||||| ||| Sbjct 4064 TCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCT 4123 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || || |||||| |||| ||| || |||||||||||||| Sbjct 4124 TGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGA---TTCCACTTCAAGAGTAATT 4180 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || || || | |||||| Sbjct 4181 GTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216 >seq157544 Length=1252 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||||||||| ||||| || || ||||| |||||||| || | | ||| | Sbjct 1251 GAGACGGAGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCG 1192 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| ||||| ||| || || || || || | |||||| |||| | ||| || || Sbjct 1191 ACCATCCTCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTC 1132 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || |||||||| ||| ||| |||||| | || ||| || || || || Sbjct 1131 CTTATCCTGAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGT 1072 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || ||||| ||||| | ||||| Sbjct 1071 GATAGTCTTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033 >seq270304 Length=645 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||||||||| || ||||| || || || || | | || | |||||| Sbjct 93 AGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACCATCT 152 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||| |||||||| ||||| || | | || |||||||| | Sbjct 153 TCAAGCTGCTTT--CCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTAT 210 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || ||| || ||| | || || | | || || ||||| || || |||| Sbjct 211 CTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATAG 270 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || | || || || || | ||||| Sbjct 271 TTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149143384271058