Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 122 2e-22
seq32333 116 9e-21
seq157544 111 4e-19
seq270304 87.8 4e-12
>seq171037
Length=1136
Score = 122 bits (134), Expect = 2e-22
Identities = 159/219 (73%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||||||||| |||||||| || || |||||||| | || || || ||||||
Sbjct 772 AGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCT 713
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| || || || |||||||| || || || | | || |||||||| |||
Sbjct 712 TCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCT 653
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATA 152069
||||| || || || |||||| |||| ||| || ||||||||||||||
Sbjct 652 TGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGA---TTCCACTTCAAGAGTAATT 596
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108
|| || || || || || || || || | |||||||||
Sbjct 595 GTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557
>seq32333
Length=4216
Score = 116 bits (128), Expect = 9e-21
Identities = 156/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||||||||| |||||||| || || |||||||| | || || || ||||||
Sbjct 4004 AGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCT 4063
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| || || || |||||||| || || || | | || |||||||| |||
Sbjct 4064 TCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCT 4123
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATA 152069
||||| || || || |||||| |||| ||| || ||||||||||||||
Sbjct 4124 TGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGA---TTCCACTTCAAGAGTAATT 4180
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || || || || || || || || | ||||||
Sbjct 4181 GTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216
>seq157544
Length=1252
Score = 111 bits (122), Expect = 4e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||||||||| ||||| || || ||||| |||||||| || | | ||| |
Sbjct 1251 GAGACGGAGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCG 1192
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| ||||| ||| || || || || || | |||||| |||| | ||| || ||
Sbjct 1191 ACCATCCTCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTC 1132
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || |||||||| ||| ||| |||||| | || ||| || || || ||
Sbjct 1131 CTTATCCTGAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGT 1072
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || || || ||||| ||||| | |||||
Sbjct 1071 GATAGTCTTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033
>seq270304
Length=645
Score = 87.8 bits (96), Expect = 4e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || |||||||||||||| || ||||| || || || || | | || | ||||||
Sbjct 93 AGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACCATCT 152
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || ||||| |||||||| ||||| || | | || |||||||| |
Sbjct 153 TCAAGCTGCTTT--CCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTAT 210
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
|||| || ||| || ||| | || || | | || || ||||| || || ||||
Sbjct 211 CTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATAG 270
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||| || || | || || || || | |||||
Sbjct 271 TTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1149143384271058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |