Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq171037 116 3e-21 seq270304 114 1e-20 seq32333 113 4e-20 >seq171037 Length=1136 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 ||||||||||| ||||||||||| |||| || || || ||||| | ||| |||| | Sbjct 558 AAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCA 617 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || | | | | ||||| || ||| ||||| ||||| |||| ||| Sbjct 618 AGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGAT 677 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||||||||||||| ||| || |||||| | |||||| | || | | ||||| Sbjct 678 CAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTAC 737 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||||| || ||||| || || || ||| | ||| | ||||| || ||||||| Sbjct 738 AATATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGGCA 789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| ||||| |||| ||||| || ||||| ||||| ||| | || Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | || | | | ||| ||||| || |||||||| ||||| || || Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||| | | |||| ||| || |||||| | ||||| || | | ||| ||||||||| Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTAT--CCGATTATA 966 Query 111278 ATATACAAAAAGAATCTAC 111296 |||| || ||||||||||| Sbjct 967 ATATTCAGAAAGAATCTAC 985 >seq270304 Length=645 Score = 114 bits (126), Expect = 1e-20 Identities = 172/241 (71%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| || ||||| ||||| || ||| | ||| ||||| | Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || |||| | | || || ||| || || || ||||| ||||| ||||| Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||||||||||||| || || || || | |||||| || | ||| | | || |||| Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTT--CTGACTATA 127 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAAA 111337 |||||||||| |||||||| || ||| |||| | ||||| || || ||| |||| | || Sbjct 126 ATATACAAAAGGAATCTACTCTTCATCTAGTTCTTCGTCTTCGTGGGGGC-ATAATTGAA 68 Query 111338 C 111338 | Sbjct 67 C 67 >seq32333 Length=4216 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||||||||| |||| || || || ||||| | ||| |||| | || Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | ||||| || ||| ||||| ||||| |||| ||||| Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||||||||||||| ||| || |||||| | |||||| | || | | ||||| || Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||| || ||||| || || || ||| | ||| | ||||| || ||||||| Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGGCA 3987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| ||||| |||| ||||| || ||||| ||||| ||| | || Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | || | | | ||| ||||| || |||||||| ||||| || || Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||| | | |||| ||| || |||||| | ||||| || | | ||| ||||||||| Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTAT--CCGATTATA 3810 Query 111278 ATATACAAAAAGAATCTAC 111296 |||| || ||||||||||| Sbjct 3809 ATATTCAGAAAGAATCTAC 3791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420184653568048