Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 145 2e-29
seq32333 141 2e-28
seq157544 123 5e-23
seq40145 93.3 9e-14
seq256849 84.2 5e-11
>seq171037
Length=1136
Score = 145 bits (160), Expect = 2e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || ||||| || ||||| | || ||||| || || ||||| || |
Sbjct 787 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 728
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || | |||||| || |||||||| || ||||| || | | |||||| ||| |||
Sbjct 727 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 668
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||| ||||||||||| ||||| | |||||| | || || ||||| | ||| |||
Sbjct 667 ATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACT 608
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| ||||| || ||||| || |||| || || || ||||| ||||||||
Sbjct 607 TCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTT 558
Score = 125 bits (138), Expect = 1e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947
|| ||||| || || || |||||| || || || || || | | || || | ||
Sbjct 1000 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 941
Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007
||||||||||| |||||||| || || ||||| |||||| ||||| || || || |||
Sbjct 940 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 881
Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067
||||| || ||||| | | | || | ||||| | ||||||||| | ||| || |||
Sbjct 880 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 821
Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||||| ||| ||||| || ||||||||
Sbjct 820 TTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
>seq32333
Length=4216
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || ||||| || ||||| | || ||||| || || ||||| || |
Sbjct 3989 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 4048
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || | |||||| || |||||||| || ||||| || | | |||||| ||| |||
Sbjct 4049 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 4108
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||| ||||||||||| ||||| | |||||| | || || ||||| | ||| |||
Sbjct 4109 ATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACT 4168
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| ||||| || ||||| || |||| || || || ||||| ||||||
Sbjct 4169 TCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216
Score = 125 bits (138), Expect = 1e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947
|| ||||| || || || |||||| || || || || || | | || || | ||
Sbjct 3776 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 3835
Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007
||||||||||| |||||||| || || ||||| |||||| ||||| || || || |||
Sbjct 3836 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 3895
Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067
||||| || ||||| | | | || | ||||| | ||||||||| | ||| || |||
Sbjct 3896 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 3955
Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||||| ||| ||||| || ||||||||
Sbjct 3956 TTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
>seq157544
Length=1252
Score = 123 bits (136), Expect = 5e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941
|| || || || ||||||| || ||| ||||| ||||||||||| | || |||||
Sbjct 1250 AGACGGAGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGA 1191
Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001
||||||||||| ||||| || ||||| || | ||| || || || || || ||||||
Sbjct 1190 CCATCCTCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCC 1131
Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061
|| || || || || ||||| || | || || || || | || || ||||| |||
Sbjct 1130 TTATCCTGAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTG 1071
Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||| || || | ||||| |||||||| |||||
Sbjct 1070 ATAGTCTTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033
>seq40145
Length=3774
Score = 93.3 bits (102), Expect = 9e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1162 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 1220
Score = 93.3 bits (102), Expect = 9e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2397 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 2455
>seq256849
Length=689
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || || || || || |||| || ||| ||||| ||||||||||| |
Sbjct 642 CCACCTCGGAGACGGAGGACAAGGTGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 583
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| ||||| ||||||||||| || || || ||||| || | ||| || ||||| ||
Sbjct 582 AAAGTGCGACCATCCTCTAGCTGCTTGCCTGCAAAAATTAGACGCTGCTGGTCTGGTGGG 523
Query 282993 ATACCCTCCTTGTCTTGGATC 283013
|| |||||||| || || |||
Sbjct 522 ATGCCCTCCTTATCCTGAATC 502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1042495876948292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |