Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 141 2e-28
seq32333 140 8e-28
>seq171037
Length=1136
Score = 141 bits (156), Expect = 2e-28
Identities = 164/219 (75%), Gaps = 9/219 (4%)
Strand=Plus/Plus
Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA 177973
|||||||| |||| || || ||||| || || ||||| || || || || || |||||
Sbjct 557 TAAAATGC---AAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGA 613
Query 177974 AAGCTCA---GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030
| ||| ||||| || |||||||| || |||||||| ||||| ||||| || ||
Sbjct 614 A---TCAAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCC 670
Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGC 178090
|| || || ||| | ||||| || || |||||||| ||||||||||| ||||| || |
Sbjct 671 ACCTGATCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATC 730
Query 178091 CGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||||| || | || ||||| ||||| || ||||||||
Sbjct 731 AGATTACAATATTCAGAAAGAGTCAACTCTTCATCTTGT 769
Score = 116 bits (128), Expect = 9e-21
Identities = 159/221 (72%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980
|| ||||| || |||||||| || || || || || || | || || ||| |||
Sbjct 792 CAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAA---TCAAGT 848
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| | || ||| ||||| || || || || ||||||||||| || || ||||||
Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|||||| | || || ||||||||||| || ||||| | | || | ||||||||||
Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
| || |||||||| || |||| || || | ||||||||
Sbjct 969 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAG 1009
>seq32333
Length=4216
Score = 140 bits (154), Expect = 8e-28
Identities = 157/209 (75%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980
||||| || || ||||| || || ||||| || || || || || |||||| |||
Sbjct 4212 CAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAA---TCAAGT 4156
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| || |||||||| || |||||||| ||||| ||||| || || || || ||
Sbjct 4155 GACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAA 4096
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
||| | ||||| || || |||||||| ||||||||||| ||||| || | ||||| ||
Sbjct 4095 CAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAAT 4036
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
| || ||||| ||||| || ||||||||
Sbjct 4035 ATTCAGAAAGAGTCAACTCTTCATCTTGT 4007
Score = 116 bits (128), Expect = 9e-21
Identities = 159/221 (72%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980
|| ||||| || |||||||| || || || || || || | || || ||| |||
Sbjct 3984 CAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAA---TCAAGT 3928
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| | || ||| ||||| || || || || ||||||||||| || || ||||||
Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|||||| | || || ||||||||||| || ||||| | | || | ||||||||||
Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
| || |||||||| || |||| || || | ||||||||
Sbjct 3807 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAG 3767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1198851455027212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |