Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq171037 141 2e-28 seq32333 140 8e-28 >seq171037 Length=1136 Score = 141 bits (156), Expect = 2e-28 Identities = 164/219 (75%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA 177973 |||||||| |||| || || ||||| || || ||||| || || || || || ||||| Sbjct 557 TAAAATGC---AAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGA 613 Query 177974 AAGCTCA---GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030 | ||| ||||| || |||||||| || |||||||| ||||| ||||| || || Sbjct 614 A---TCAAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCC 670 Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGC 178090 || || || ||| | ||||| || || |||||||| ||||||||||| ||||| || | Sbjct 671 ACCTGATCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATC 730 Query 178091 CGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || | || ||||| ||||| || |||||||| Sbjct 731 AGATTACAATATTCAGAAAGAGTCAACTCTTCATCTTGT 769 Score = 116 bits (128), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 || ||||| || |||||||| || || || || || || | || || ||| ||| Sbjct 792 CAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAA---TCAAGT 848 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| | || ||| ||||| || || || || ||||||||||| || || |||||| Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 |||||| | || || ||||||||||| || ||||| | | || | |||||||||| Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || |||||||| || |||| || || | |||||||| Sbjct 969 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAG 1009 >seq32333 Length=4216 Score = 140 bits (154), Expect = 8e-28 Identities = 157/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 ||||| || || ||||| || || ||||| || || || || || |||||| ||| Sbjct 4212 CAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAA---TCAAGT 4156 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || |||||||| || |||||||| ||||| ||||| || || || || || Sbjct 4155 GACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAA 4096 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||| | ||||| || || |||||||| ||||||||||| ||||| || | ||||| || Sbjct 4095 CAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAAT 4036 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||||| ||||| || |||||||| Sbjct 4035 ATTCAGAAAGAGTCAACTCTTCATCTTGT 4007 Score = 116 bits (128), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 || ||||| || |||||||| || || || || || || | || || ||| ||| Sbjct 3984 CAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAA---TCAAGT 3928 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| | || ||| ||||| || || || || ||||||||||| || || |||||| Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 |||||| | || || ||||||||||| || ||||| | | || | |||||||||| Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || |||||||| || |||| || || | |||||||| Sbjct 3807 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAG 3767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198851455027212