Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq157544 113 4e-20 seq277908 84.2 2e-11 >seq157544 Length=1252 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || ||||| |||||||| ||||| || || ||||| Sbjct 1250 AGACGGAGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGA 1191 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || || || ||||| || |||| || | || |||| Sbjct 1190 CCATCCTCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCC 1131 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| |||| |||| || | | || ||||||||||| ||||| | || Sbjct 1130 TTATCC-TGAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGT 1072 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||||||||| || ||||| Sbjct 1071 GATAGTCTTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033 >seq277908 Length=620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||||| || |||||||||||||||||||||||| |||||||| |||| || Sbjct 540 ACAAGATGCAAGGTCGACTCCTTCTGAATGTTATAGTCGGAAAGGGTGCGTCCGTCCTCC 599 Query 41714 AGCTGCTTGCCGGCGAATATC 41734 || ||||| || ||||||||| Sbjct 600 AGTTGCTTTCCTGCGAATATC 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460475599237600