Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2636 158 1e-33 >seq2636 Length=44840 Score = 158 bits (174), Expect = 1e-33 Identities = 480/738 (65%), Gaps = 43/738 (6%) Strand=Plus/Plus Query 16835 CAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACA 16894 |||||||| || || || || |||||||| || || | |||| || || || Sbjct 42415 CAGTTCATGCCAATCAGGTCCACAGGAAGAGCGTCAGTAAGAAATTCCACTTCGATGTCA 42474 Query 16895 ACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTA 16954 || |||||| ||||| | |||| || |||| ||||| | | | | | ||||| Sbjct 42475 ACAGCTTCCCGCATAATCTTTTCAACGCGCTCCTTAGACGGCTTGTTTCTGATGTGTTTG 42534 Query 16955 AACATCAGACATGCGAAATCGCAATGT-AATCCCT-CGTCTCTGCTGATAAGTTCGTTAG 17012 |||| ||||| || || || | ||| || |||| | || | ||| || ||||| || Sbjct 42535 AACAAAAGACAAGCAAAGTC--AGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTGC 42592 Query 17013 AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACC 17072 |||||||| || ||||| || || ||||| ||||| || || | || ||||||| Sbjct 42593 TGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGACC 42652 Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGT 17132 | |||||||| | ||||| |||| ||||| || | || || || | | || | | Sbjct 42653 CGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTGGACT 42712 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || || ||||||||| | |||| || || || | ||| | ||| | |||| Sbjct 42713 TCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTTT 42772 Query 17193 CTATGGCCTTAAATA--ATTTCTCT-------------------------TT----TTCC 17221 || || || || | | || || || ||| Sbjct 42773 GTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCGTTCG 42832 Query 17222 TGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCC 17281 | |||| | ||||||||||||||||| || |||||||| ||||| || || || Sbjct 42833 ATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATTTTCG 42892 Query 17282 ATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAAT 17341 || || ||||| || || || ||||| |||||||||| || || ||||| ||| Sbjct 42893 ATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACTGAAG 42952 Query 17342 CGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA--ATATAT 17399 ||||| | |||||||| || || || |||||||||||||| ||||| || | | |||| Sbjct 42953 CGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGACATAT 43012 Query 17400 GCTTAATGAAATATTTTTCGTCCG--GTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGA 17457 | |||||| | || ||| ||| | || | | | |||||| ||| || || | Sbjct 43013 G--AAATGAAGTGCTTCTCG-CCGTCCTTTAGGGATTC-CCAGTCACCTAAGTCCTTCGC 43068 Query 17458 TATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 | || ||||| || ||||||||| |||||| ||||| || || | | ||| || Sbjct 43069 CAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGAT 43128 Query 17518 ATCATTGTATTGTATGGG 17535 |||| || || ||||| Sbjct 43129 GTCATGATACTGGATGGG 43146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517178284949040