Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2636 114 1e-20 seq28812 84.2 2e-11 >seq2636 Length=44840 Score = 114 bits (126), Expect = 1e-20 Identities = 398/622 (64%), Gaps = 37/622 (6%) Strand=Plus/Plus Query 16186 GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTC 16245 |||||| |||| ||||| || ||||| || || ||||| || | ||| || ||||| Sbjct 42528 GTGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTC 42587 Query 16246 GTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 ||| || || || || ||||| || || ||||| |||||||| || | ||||| Sbjct 42588 ATTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAA 42647 Query 16306 TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT 16365 ||||| |||||||| | ||||| || | ||||| || | || || || | | || Sbjct 42648 CGACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGT 42707 Query 16366 AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCAT 16425 | | | || ||||||||| || |||| || || || | || | |||| | Sbjct 42708 GGACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAG 42767 Query 16426 CGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATA------------------ 16465 |||| || || || |||| | || || | |||| Sbjct 42768 GGTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACC 42827 Query 16466 --TCGATT---------ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGT 16514 |||||| ||||||||||| || || | | |||||||| ||||| || | Sbjct 42828 GTTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATAT 42887 Query 16515 TCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGT 16574 | || || || ||||| || ||||||||||| || || |||| || |||||||| Sbjct 42888 TTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGAC 42947 Query 16575 AAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--A 16632 || ||||| | || || ||||| || || ||||| || || |||||||| || | | Sbjct 42948 TGAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGA 43007 Query 16633 TATGTGCTTAATGAAATATTTTTCGTC-AGATGTAAGAATATGCCAATCTTTTAAATCTT 16691 || || |||||| | || ||| | | || | || | ||| || ||| || | Sbjct 43008 CATATG--AAATGAAGTGCTTCTCGCCGTCCTTTAGGGAT-TCCCAGTCACCTAAGTCCT 43064 Query 16692 TGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCC 16751 | | | || ||||| || |||||||| |||||| ||||| || || | | || Sbjct 43065 TCGCCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCC 43124 Query 16752 AAATATCATTGTATTGTATGGG 16773 | || |||| || || ||||| Sbjct 43125 AGATGTCATGATACTGGATGGG 43146 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| |||| ||||||||| || ||||||||||| ||||| || | |||||| |||||| Sbjct 42191 TGGTATTCACCAACGCGTTTCTCAAAGAAGTTAGTCTTTCCTTCCAGAGATATGTTTTCC 42250 Query 15974 ATAAAATCAAAGGGATTAGTAGC 15996 || ||||| || || || || || Sbjct 42251 ATGAAATCGAATGGGTTTGTCGC 42273 >seq28812 Length=1987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/158 (72%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 |||||| | || || || | | ||||| || ||||| || || || || || ||||| Sbjct 934 ATATACATGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCAATCTGG 993 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || ||||||||||| || | || || || |||||||| || |||||| | || Sbjct 994 AAGCCATAGAAGCAACG-GGCTTCGGAATCTGTACTTCTTTACTGAAGCGTTCCACAAGA 1052 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC 16629 || ||||| || || |||||| |||| |||||||| || Sbjct 1053 TTTTCATTGACTATTCCGTCATTTGCGGCAAAAAATGC 1090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511051436414960