Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2636 199 5e-46 seq5746 185 1e-41 seq28812 113 5e-20 >seq2636 Length=44840 Score = 199 bits (220), Expect = 5e-46 Identities = 413/618 (67%), Gaps = 34/618 (6%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| |||| | ||| || || || ||| || || || || | || |||| ||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 ||| || || | ||| ||||| || |||||||| || | ||| || || |||||||| Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || || |||||||||| || ||||| || |||||||||| || | ||| | || | Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG 42708 Query 24300 GCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG---- 24352 | | |||| ||||| || | |||||||| |||||||| || |||||||| Sbjct 42709 GACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGG 42768 Query 24353 ----------CATTG---------TCTCTATA---GCATTAA-----AGAGATAGttttt 24385 ||||| || ||| | | | ||| ||||| | | Sbjct 42769 GTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCG 42828 Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 ||| | || |||| ||| ||||| || | ||| |||||||||||| ||||| || Sbjct 42829 TTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATT 42888 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505 ||| || || || || || || ||||| || | || || | ||||||||||||| || Sbjct 42889 TTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACT 42948 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 || |||||| | | ||||||||| ||||||||||| || || |||||||| || | || Sbjct 42949 GAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGAC 43008 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 24625 || | || || | || ||| | |||| | ||| ||| | || || | Sbjct 43009 ATATGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCGC 43068 Query 24626 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | || ||||| || || ||||||||||| ||| | ||||| || || | | |||||| Sbjct 43069 CAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGAT 43128 Query 24686 GTCATGATATTGAATTGG 24703 ||||||||| || || || Sbjct 43129 GTCATGATACTGGATGGG 43146 >seq5746 Length=27722 Score = 185 bits (204), Expect = 1e-41 Identities = 378/562 (67%), Gaps = 0/562 (0%) Strand=Plus/Plus Query 53930 TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 53989 |||||| ||| ||||| |||||| || || |||||| || | | || ||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280 Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049 || | ||| ||||| | ||||| ||| ||| | ||| ||| ||| || | ||| Sbjct 14281 TCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCA 14340 Query 54050 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 54109 |||||||| ||||| || ||||| | | ||| |||||| || || ||||| Sbjct 14341 GGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTA 14400 Query 54110 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACT 54169 || || | ||| || || || | ||||| ||||||| ||| || | | | Sbjct 14401 CGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCA 14460 Query 54170 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 54229 || ||||| |||||||| |||||||| | ||| | || ||||| |||||||| | || | Sbjct 14461 CCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGC 14520 Query 54230 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 54289 ||||||| | |||||||||| | ||||| || || | ||| | | || || || Sbjct 14521 ATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACCCTTGCTTCGT 14580 Query 54290 ATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 54349 || || |||||| || || || || |||| || || | || || | || Sbjct 14581 ATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTTC 14640 Query 54350 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 54409 || || ||||| |||||||| || || |||||| |||| | || || |||| || ||| Sbjct 14641 AAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGAC 14700 Query 54410 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469 ||||| | || || || || ||||||| ||| || || || || |||||||| ||| Sbjct 14701 ATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTTT 14760 Query 54470 TCAGAAAGTAGATTGTACGTCT 54491 | || | || | ||| |||| Sbjct 14761 CCGGACATGAGTTCGTAAGTCT 14782 >seq28812 Length=1987 Score = 113 bits (124), Expect = 5e-20 Identities = 129/172 (75%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || |||| ||| | || || | ||| |||||| ||||| ||||| ||||| || || Sbjct 928 TCATTAATATACATGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCA 987 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || || || || ||||| || | || |||| ||||||||||||| ||| || ||||| Sbjct 988 ATCTGGAAGCCATAGAAGCAACGGGCTTCGG-AATCTGTACTTCTTTACTGAAGCGTTCC 1046 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 | | ||||||||| |||||||||||| | || |||||||| || | |||| Sbjct 1047 ACAAGATTTTCATTGACTATTCCGTCATTTGCGGCAAAAAATGCGAGGACAT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593300220937440