Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7809 89.7 4e-13 seq15210 82.4 6e-11 >seq7809 Length=21078 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||||||||| || ||||| | ||||| || | || || || |||||||| Sbjct 13576 GTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCA 13517 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| |||| ||| |||||| || | || || ||||| ||| || ||| Sbjct 13516 GCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTC 13457 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || | |||||| |||| ||||| || ||||| || ||||| Sbjct 13456 ACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGCCTGTCAACGTC 13397 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 13396 TTGACGAAAATCTGCAT 13380 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||||||||| || ||||| | ||||| || | || || || |||||||| Sbjct 13804 GTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCATCTTCGAGTTGTTTGCCA 13745 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| |||| ||| |||||| || | || || ||||| ||| || ||| Sbjct 13744 GCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTC 13685 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || | |||||| |||| ||||| || ||||| || ||||| Sbjct 13684 ACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGCCTGTCAACGTC 13625 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 13624 TTGACGAAAATCTGCAT 13608 >seq15210 Length=8810 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || ||||| |||| || | |||||||||||||||||| ||||| |||| | Sbjct 1555 CCGCCGCGAAGTCTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGAC 1496 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 || || | | || || ||||||||||| || | ||||| | ||| ||||| Sbjct 1495 AGAGTACGTCCATCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTC 1443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421967004287048