Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2636 190 2e-43 seq7809 116 4e-21 seq4071 113 5e-20 seq28812 105 7e-18 >seq2636 Length=44840 Score = 190 bits (210), Expect = 2e-43 Identities = 438/661 (66%), Gaps = 33/661 (5%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| | ||| || |||||| | ||||||||||| | ||||| || || | ||| Sbjct 43188 GAGCCTATTCTGGTCGTGAACCCGAGGCGGTTCGTGATCATGCCCATCCAGTATCATGAC 43129 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| | ||||| ||||| | ||| || || |||||||| ||||| || ||| || Sbjct 43128 ATCTGGCAGTTTTACAAGAAGGCGGTGGCTTCATTTTGGACCGTTGAGGAAGTTGACTTG 43069 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | |||||| | |||||||| | | || ||| |||| || ||||| | Sbjct 43068 GCGAAGGACTTAGGTGACTGGGAATCCCTAAAGGACGGCGAGAAGCACTTCATTTCATAT 43009 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || || ||||| ||||| |||||||| || || || || ||||| || || || ||| Sbjct 43008 GTCCTCGCATTTTTTGCCGCGAGCGACGGAATAGTTAATGAAAATCTTGTAGAACGCTTC 42949 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 ||| || || ||| | | || || || |||||||| ||||| ||||| || || || Sbjct 42948 AGTCAAGAAGTACAGATTCCGGAAGCCCGTTGCTTCTATGGCTTCCAGATTGCAATCGAA 42889 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGA 116931 || | ||||||||||||||||| ||||||||| ||||| | | | ||| | Sbjct 42888 AATATTCACTCGGAAATGTATTCTCTCCTCATCGATACGTATATTAAGGACCCAATCGAA 42829 Query 116932 GGAGAA--------GCTC------CGTT-------------TGTTGAACGCCATCGAGAC 116964 | || |||| |||| |||| || || | | || Sbjct 42828 CGGTAATTTCTCTGGCTCTTATTTCGTTTTTAGTGACTTCCTGTTCAATGCGGTACAAAC 42769 Query 116965 GATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGC 117024 | || || || || ||||||| || ||||| || ||||| | | | || | Sbjct 42768 CCTACCTTGTGTGAAGAAGAAGGCTGATTGGGCACTTAAATGGATTGGTGACTCGAAGTC 42709 Query 117025 CGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTT-CGGGCA 117083 | | || ||||| || || ||||| || ||||| ||||| || ||||||| |||| Sbjct 42708 CACTTTTCCAGAGCGTCTAGTTGCCTTTGCTGCCGTAGAGGGGGTTTTCTTTTCCGGGTC 42649 Query 117084 GTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCA 117143 |||| || | || || ||| | ||||| || || || ||||| || |||| ||||||| Sbjct 42648 GTTT-GCGTCTATCTTCTGGTTGAAGAAGCGTGGGCTTATGCCGGGATTGACATTCAGCA 42590 Query 117144 ACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGC 117203 | || || || | | || || || || || |||||||| ||| | ||||||| | Sbjct 42589 ATGAACTAATAAGCCGTGATGAAGGGCTTCACACTGACTTTGCTTGTCTTTTGTTCAAAC 42530 Query 117204 A 117204 | Sbjct 42529 A 42529 >seq7809 Length=21078 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || |||||||| || || | || || || ||| | Sbjct 13380 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13439 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | |||| ||||| | ||||||||||| ||||| ||||||| Sbjct 13440 GACTCGATTGAGAATG-TGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13498 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| || | || |||||||| || || || | |||||||| ||||||||| Sbjct 13499 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAA 13558 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||| | || || ||||| || ||||| Sbjct 13559 TATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCG 13594 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || |||||||| || || | || || || ||| | Sbjct 13608 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13667 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | |||| ||||| | ||||||||||| ||||| ||||||| Sbjct 13668 GACTCGATTGAGAATG-TGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13726 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| || | || |||||||| || || || | || ||||| ||||||||| Sbjct 13727 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAA 13786 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||| | || || ||||| || ||||| Sbjct 13787 TATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCG 13822 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || |||||||| || || | || || || ||| | Sbjct 13836 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTAGAGGTTGAGCCCAGC 13895 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | |||| ||||| | ||||| || || |||||| | || || Sbjct 13896 GACTCGATTGAGAATG-TGAAGGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGATCA 13954 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| ||| || ||||| || || || | ||||| ||| || ||||| Sbjct 13955 ACAAAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 14014 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||| ||| | || |||||||||||| | ||| | | ||||| Sbjct 14015 CATTCAGAAAGAGTCTACACTGCATCTAGTGCTACGCCTTCGTGGCGG 14062 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || |||||||| || || | || || ||| | | | Sbjct 13152 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC 13211 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | |||| | ||||| | ||||||||||| ||||| ||||||| Sbjct 13212 GACTCGATTGAGAATG-TCAAAGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13270 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| || | || |||||||| || || || | |||||||| ||||||||| Sbjct 13271 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAA 13330 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||| | || || ||||| || ||||| Sbjct 13331 TATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCG 13366 >seq4071 Length=35431 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || || || | || |||||| ||| Sbjct 35264 ATGCAGATTTTTGTCAAGACACTGACCGGTAAGACTATTACGTTGGAGGTCGAACCCAGT 35205 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | |||||| || || | ||||||||||||||||| | ||||| Sbjct 35204 GACTCGATTGAGAATG-TCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCACCAGACCA 35146 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| |||| ||| ||||| || || || || | |||||||| ||||||||| Sbjct 35145 ACAGAGACTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAA 35086 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| ||| | || |||||||| ||| |||| Sbjct 35085 TATTCAGAAAGAGTCGACCCTGCATCTGGTGCTGCG 35050 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||||||||||||||| | ||||| ||| |||| |||| ||| || ||||| || || Sbjct 35399 GACAAAGAGGGCATCCCACCAGACCAACAAAGACTGATCTTCGCCGGTAAACAACTCGAG 35340 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| |||||||||||| || |||||| | || |||||||| || ||| Sbjct 35339 GATGGTCGCACCCTTTCCGACTACAACATTCAAAAGGAGTCGACCCTGCATCTGGTCTTG 35280 Query 40903 CG 40904 || Sbjct 35279 CG 35278 >seq28812 Length=1987 Score = 105 bits (116), Expect = 7e-18 Identities = 235/346 (68%), Gaps = 20/346 (6%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || ||| || |||||| | ||||||||||| | ||||| | | ||| Sbjct 1267 GAGCCTCTTCTGGTCGTGAACCCGAGGCGGTTCGTGATCATGCCCATCATGAAAGCTGAC 1208 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 | || | ||||| |||| | | | | || |||||||| ||||| || ||| || Sbjct 1207 A-GT------TTTACAAGAAGGTGGTGCCTTTTTT-TGGACCGTTGAGGAAGTTGACTTG 1156 Query 116696 TCCAAGGACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCC----ATTTCATCA 116750 | || || | |||| ||| |||| || ||| || | || ||||||| Sbjct 1155 GCGAAAGAATTAGGTGACTAGGAATCGCTA-AAGGACGGCGGGAGCACTTAATTTCAT-- 1099 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810 | || || || ||||| ||||| | ||||| || ||||| || ||||| || || | Sbjct 1098 ---ATGTCCTCGCATTTTTTGCCGCAAATGACGGAATAGTCAATGAAAATCTTGTGGAAC 1042 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 | ||| | | || || ||| | |||| || || |||||||| ||||| ||||| || | Sbjct 1041 GCTTCAGTAAAGAAGTACAGATT-CCGAAGCCCGTTGCTTCTATGGCTTCCAGATTGCAA 983 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 | || || | |||||||| |||||||| ||||||||||| ||| Sbjct 982 TCGAAAATATTCACTCGGAGATGTATTCTCTCCTCATCGACATGTA 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514853536053280