Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15210 102 1e-16 seq7809 96.9 5e-15 >seq15210 Length=8810 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || ||||| || |||||||| | ||| |||| | Sbjct 1329 ATGCAGATATTTGTCAAGACCCTCACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCG 1388 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || ||| |||| || |||||||||||||| ||||| || || || ||| Sbjct 1389 GACTCCATCGAGAATGTAAAGGCCAAGATTCAAGATAAAGAGGGTATCCCTCCAGACCAA 1448 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||||| || || || ||||| | || ||| | || || | ||||||||| Sbjct 1449 CAGCGGCTTATATTCGCTGGCAAACAGCTCGAAGATGGACGTACTCTGTCGGATTATAAT 1508 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| || || ||| | || |||| Sbjct 1509 ATTCAAAAGGAGTCCACTCTACACCTGGT 1537 >seq7809 Length=21078 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||||||||| || ||| ||||| |||| | | Sbjct 13836 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTAGAGGTTGAGCCCAGC 13895 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| ||| | || ||||| || || || ||||| || || || |||||| Sbjct 13896 GACTCGATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGATCAA 13955 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || || || || |||||| | |||||| | || || | ||||| || Sbjct 13956 CAAAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAAC 14015 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| ||||| || || ||||| | || |||| | || || ||| Sbjct 14016 ATTCAGAAAGAGTCTACACTGCATCTAGTGCTACGCCTTCGTGGCGGT 14063 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || |||||||| || ||| | || ||||| | | Sbjct 13152 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC 13211 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| ||| | ||| ||||| || || ||||| || || || || || ||| Sbjct 13212 GACTCGATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13271 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||||| || |||||| | || ||| | || || | || || ||| Sbjct 13272 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAAT 13331 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || || | ||| | || || || | || ||||| || Sbjct 13332 ATTCAAAAGGAGTCGACCCTCCATCTTGTCTTGCGGCTCCGTGGTGGCAT 13381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754919833990400