Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15210 120 3e-22 seq7809 102 7e-17 seq4071 96.9 3e-15 >seq15210 Length=8810 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | ||| | |||| ||| | || ||||| |||||||| || ||||| Sbjct 1556 ACCGCCGCGAAGTCTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGA 1497 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| ||||||||||| |||||| | || || ||||| || || ||||| Sbjct 1496 CAGAGTACGTCCATCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGG 1437 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||| || ||| ||| || || || | |||| || ||||| ||| || Sbjct 1436 GATACCCTCTTTATCTTGAATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAAC 1377 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||| | || || || || || || || ||||| ||||||||| Sbjct 1376 CTCGAGGGTTATAGTCTTCCCTGTGAGGGTCTTGACAAATATCTGCATG 1328 >seq7809 Length=21078 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 118541 TGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 |||||||||||| |||||||||||||| | ||||| ||||||||| ||||| || Sbjct 14033 TGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGTTGTTTACC 13974 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660 ||| |||| || | || ||||| || || || || |||||||| ||||| || Sbjct 13973 GGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTGGCCTT 13914 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | | ||| || ||| ||||| | || | |||||||| |||| || Sbjct 13913 CACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTGCCTGTCAACGT 13854 Query 118721 TTTTACAAAAATCTGCATG 118739 || || |||||||||||| Sbjct 13853 CTTGACGAAAATCTGCATG 13835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| |||||||| ||||| ||| | ||||| ||| |||| Sbjct 13587 CAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCGA 13528 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| ||||| | || || ||||| || || || || || ||||| ||||| | Sbjct 13527 GTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGA 13468 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | || | | ||| || ||| ||||| | || | ||||||| Sbjct 13467 TTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGC 13408 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||| || || || |||||||||||| Sbjct 13407 CTGTCAACGTCTTGACGAAAATCTGCATG 13379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| |||||||| ||||| ||| | || || ||| |||| Sbjct 13815 CAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCATCTTCGA 13756 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| ||||| | || || ||||| || || || || || ||||| ||||| | Sbjct 13755 GTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGA 13696 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | || | | ||| || ||| ||||| | || | ||||||| Sbjct 13695 TTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGC 13636 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||| || || || |||||||||||| Sbjct 13635 CTGTCAACGTCTTGACGAAAATCTGCATG 13607 >seq4071 Length=35431 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || |||||||| ||||| ||||| ||| | ||||| ||| Sbjct 35052 CAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCATC 35111 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||| || || |||||| |||| || | ||| || || || || |||||||| ||||| Sbjct 35112 CTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTC 35171 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | | ||| || |||||||| | || | || Sbjct 35172 CTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACCTCCAACGTAATAGT 35231 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || |||||||||||||| Sbjct 35232 CTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||| |||| || | || ||||| |||||||||||||| ||| Sbjct 35264 TACCACCACGGAGTCGCAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGG 35323 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||||||| ||||| || ||| |||| || | || || || || | Sbjct 35324 AAAGGGTGCGACCATCCTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTG 35383 Query 118630 GTATGCCCTCCTTGTCT 118646 | |||||||| |||||| Sbjct 35384 GGATGCCCTCTTTGTCT 35400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433530197226376