Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7809 113 5e-20 seq4071 104 3e-17 seq11286 100 3e-16 seq2090 98.7 1e-15 seq14131 86.0 7e-12 >seq7809 Length=21078 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | ||| | || |||||||||||||||||| || | || || || | Sbjct 13366 CGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCA 13307 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || || ||||| || || |||||||| ||||| | ||| | | ||| ||| Sbjct 13306 TCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTG 13247 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| |||||| ||||| || | | || |||||| | ||| || || | || || Sbjct 13246 TCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTAATC 13187 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || | ||||| |||||||| ||||| Sbjct 13186 GTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | ||| | || |||||||||||||||||| || | || || || | Sbjct 13594 CGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCA 13535 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || || ||||| || || |||||||| ||||| | ||| | | ||| ||| Sbjct 13534 TCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTG 13475 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| |||||| || | || | | || |||||| | || || || | || || Sbjct 13474 TCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATT 13415 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || | |||||| || || || ||||| Sbjct 13414 GTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | ||| | || |||||||||||||||||| || | || || || | Sbjct 13822 CGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCA 13763 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || || ||||| || || |||||||| ||||| | ||| | | ||| ||| Sbjct 13762 TCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTG 13703 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| |||||| || | || | | || |||||| | || || || | || || Sbjct 13702 TCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATT 13643 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || | |||||| || || || ||||| Sbjct 13642 GTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 >seq4071 Length=35431 Score = 104 bits (114), Expect = 3e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 ||| ||| || | | ||||| ||||| ||||| || ||| || ||||||||||| | Sbjct 35033 ATTATCCGCCACGAAGACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGT 35092 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | | || || || | || || || ||||| |||||||| || |||| ||| ||||| | Sbjct 35093 CGGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTG 35152 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATT 43131 || | || ||| |||||| ||| || |||| || | | || ||| || | || Sbjct 35153 GTGGGATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTT 35212 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || | ||| || || || || || || ||||| ||||| || ||||| Sbjct 35213 CGACCTCCAACGTAATAGTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 >seq11286 Length=13665 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| | |||| |||| |||||| |||||| ||||| || ||||||||||||| ||||| Sbjct 10017 AAAATGTGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACT 10076 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||| ||| Sbjct 10077 CACCACTATACTACCGCGGA 10096 >seq2090 Length=50671 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| || |||| |||| |||||| |||||| ||||| || ||||||||||||| |||||| Sbjct 9949 AAAATTGCTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTC 10008 Query 60119 ACCACTATACTACCGAGGA 60137 ||||||||||||||| ||| Sbjct 10009 ACCACTATACTACCGCGGA 10027 >seq14131 Length=9909 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3520 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3579 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3580 TACTATCGCGGA 3591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571411766753840