Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4071 107 1e-18 seq7809 86.0 4e-12 >seq4071 Length=35431 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 ||||||| || || | ||||||||| || | || |||||||| || |||||||||| Sbjct 35036 ATCCGCCACGAAGACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGG 35095 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | || ||| | || || | |||||||| ||||| || || | ||| ||||| | Sbjct 35096 AAAGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTG 35155 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||| ||||| ||||| ||| | || | ||||| || | | ||||| Sbjct 35156 GGATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGA 35215 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||| || || || ||||| || || || ||||| |||||||| Sbjct 35216 CCTCCAACGTAATAGTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 >seq7809 Length=21078 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || || ||||||||||| || ||| | || || | || ||||| || ||| Sbjct 13342 TCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAA 13283 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || || ||||| ||||| | |||| | | ||| ||||| || ||| ||||| | || Sbjct 13282 ATCAGTCGCTGTTGGTCCGGCGGG-ATTCCCTCTTTGTCCTGGAT-TTTAGCTTTGACAT 13225 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | ||||| ||| | | ||| || |||| || || |||||||| || | || |||| Sbjct 13224 TCTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCA 13165 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 13164 CAAAGATCTGCAT 13152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322848440031680