Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2636 127 2e-24 >seq2636 Length=44840 Score = 127 bits (140), Expect = 2e-24 Identities = 203/289 (70%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||| ||||| || || | | ||||||||| || |||||||| || ||||| ||||| Sbjct 42844 AATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATTTTCGATTGCAATCTG 42903 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTA 16622 || ||||| ||||| | ||||| | || |||||||| || | || | || || | | Sbjct 42904 GAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACTGAAGCGTT-CTACAA 42962 Query 16623 AGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAt 16682 ||||| ||||||||||| ||||| || |||||||| || || | | | ||| || | Sbjct 42963 GATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGACATATGAAATGAAGT 43022 Query 16683 ttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742 || ||| || || | ||||||| || || || | || || || || | Sbjct 43023 GCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCGCCAAGTCAACTTCCT 43082 Query 16743 CTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 | || |||||||| ||||| || ||||| || || | | ||| ||||| Sbjct 43083 CAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGATGTC 43131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462183743670800