Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7809 96.9 3e-15 seq15210 95.1 1e-14 >seq7809 Length=21078 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| ||||| ||||||||| || ||| | || || |||||||| || || || Sbjct 13343 CTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAA 13284 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||||||||| || || | ||||| |||||| ||||| || || Sbjct 13283 AATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATT 13224 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||| | | || || |||| |||||||| ||||| |||| |||||||| Sbjct 13223 CTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCAC 13164 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 13163 AAAGATCTGCATG 13151 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| ||||| ||||||||| || ||| | || || |||||||| || || || Sbjct 13571 CTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAA 13512 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||||||||| || || | ||||| |||||| ||||| ||| || Sbjct 13511 AATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATT 13452 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||| | ||| ||||||| ||||| || ||||| |||| ||||| || Sbjct 13451 CTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGAC 13392 Query 45325 AAAGATTTGCATG 45337 || || |||||| Sbjct 13391 GAAAATCTGCATG 13379 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| ||||| ||||||||| || || | || || |||||||| || || || Sbjct 13799 CTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAA 13740 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||||||||| || || | ||||| |||||| ||||| ||| || Sbjct 13739 AATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATT 13680 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||| | ||| ||||||| ||||| || ||||| |||| ||||| || Sbjct 13679 CTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGAC 13620 Query 45325 AAAGATTTGCATG 45337 || || |||||| Sbjct 13619 GAAAATCTGCATG 13607 >seq15210 Length=8810 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||| ||||| || || || ||| || | || || Sbjct 1537 ACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGACAGAGTACGTCCATCTTCG 1478 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || |||||||| | |||||||||||| ||||| | |||||| || || | Sbjct 1477 AGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGGATACCCTCTTTATCTTGA 1418 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || ||||| Sbjct 1417 ATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTC 1358 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| ||||| || |||||| Sbjct 1357 CCTGTGAGGGTCTTGACAAATATCTGCATG 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394801815122338