Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2636 156 4e-33 seq15210 111 1e-19 seq7809 91.5 1e-13 >seq2636 Length=44840 Score = 156 bits (172), Expect = 4e-33 Identities = 491/761 (65%), Gaps = 35/761 (5%) Strand=Plus/Minus Query 57561 TATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAA 57620 |||| ||||| ||| | | ||||| ||||| | || || ||||||||||| || ||| Sbjct 43137 TATCATGACATCTGGCAGTTTTACAAGAAGGCGGTGGCTTCATTTTGGACCGTTGAGGAA 43078 Query 57621 GTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAA--ATT 57678 || ||| || | ||||| | | || ||||| ||||| || || | | ||||| | | Sbjct 43077 GTTGACTTGGCGAAGGACTTAGGTGACTGGGAATCCCTAAAGGA--CGGCGAGAAGCACT 43020 Query 57679 TTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGG 57738 | ||| | | || | || ||||| ||||| ||| || || ||||| || ||| | | Sbjct 43019 TCATTTCATATGTCCTCGCATTTTTTGCCGCGAGCGACGGAATAGTTAATGAAAATCTTG 42960 Query 57739 TCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAG 57798 | ||| | || |||||||| || | |||| || | ||||| || || || || Sbjct 42959 TAGAACGCTTCAGTCAAGAAGTACAGATTCCGGAAGCCCGTTGCTTCTATGGCTTCCAGA 42900 Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 | || || ||||| | || || ||||||||||| || |||||||||||||| | |||| Sbjct 42899 TTGCAATCGAAAATATTCACTCGGAAATGTATTCTCTCCTCATCGATACGTATATTAAGG 42840 Query 57859 AC---AACG-ACGAGAA-----------------ACG----TAG------ACTGTTCAAC 57887 || | || ||| || || ||| |||||||| Sbjct 42839 ACCCAATCGAACGGTAATTTCTCTGGCTCTTATTTCGTTTTTAGTGACTTCCTGTTCAAT 42780 Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947 ||| | |||| | || | |||||||| || ||| || | |||||||| Sbjct 42779 GCGGTACAAACCCTACCTTGTGTGAAGAAGAAGGCTGATTGGGCACTTAAATGGATTGGT 42720 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 | | | | |||| || | ||| | ||| | || || || ||||| || || | ||| Sbjct 42719 GACTCGAAGTCCACTTTTCCAGAGCGTCTAGTTGCCTTTGCTGCCGTAGAGGGGGTTTTC 42660 Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067 ||||| || |||||| | || || ||| ||||||| || || || ||||| || || Sbjct 42659 TTTTCCGGGTCGTTTGCGTCTATCTTCTGGTTGAAGAAGCGTGGGCTTATGCCGGGATTG 42600 Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 || || ||||| || | ||| || || || || || || ||||| ||||| || || Sbjct 42599 ACATTCAGCAATGAACTAATAAGCCGTGATGAAGGGCTTCACACTGACTTTGCTTGTCTT 42540 Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAG 58187 ||| | ||||| || || ||| | ||| ||| | | ||||| || Sbjct 42539 TTGTTCAAACACATCAGAAACAAGCCGTCTAAGGAGCGCGTTGAAAAGATTATGCGGGAA 42480 Query 58188 GCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATG 58247 || || | |||||| || ||| | || || || || || |||| | || | || ||| Sbjct 42479 GCTGTTGACATCGAAGTGGAATTTCTTACTGACGCTCTTCCTGTGGACCTGATTGGCATG 42420 Query 58248 AACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 ||| | | | ||| | |||||||| || |||||||| Sbjct 42419 AACTGTCGTCTTATGGCCCAGTACATTCGTTTCGTTGCCGA 42379 >seq15210 Length=8810 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || ||||| || || || ||| |||| ||||| || || Sbjct 1328 CATGCAGATATTTGTCAAGACCCTCACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTC 1387 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || | || || || || || | || || ||||| Sbjct 1388 GGACTCCATCGAGAATGTAAAGGCCAAGATTCAAGATAAAGAGGGTATCCCTCCAGACCA 1447 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||||| || |||||||||||||||||| | ||||| | | | ||| || ||||||| Sbjct 1448 ACAGCGGCTTATATTCGCTGGCAAACAGCTCGAAGA-TGGACGTACTCTGTCGGATTATA 1506 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 | |||||||| || || ||||| || ||||| || ||||| | |||||| Sbjct 1507 ATATTCAAAAGGAGTCCACTCTACACCTGGTCCTCAGACTTCGCGGCGGT 1556 >seq7809 Length=21078 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||| ||||||||||| || | || |||||||| Sbjct 13151 CATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAG 13210 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | |||||| | ||| |||||| || || | ||||| ||||| Sbjct 13211 CGACTCGATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13270 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || || ||||||||||| | ||||| || | ||| || || Sbjct 13271 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAA 13330 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| || ||||| || ||||| || Sbjct 13331 TATTCAAAAGGAGTCGACCCTCCATCTTGT 13360 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| ||||||||||||| || || | || ||||| || Sbjct 13379 CATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAG 13438 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| |||||| || || | ||||| ||||| Sbjct 13439 CGACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13498 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || || ||||||||||| | ||||| || | ||| || || Sbjct 13499 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAA 13558 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| || ||||| || ||||| || Sbjct 13559 TATTCAAAAGGAGTCGACCCTCCATCTTGT 13588 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| ||||||||||||| || || | || ||||| || Sbjct 13607 CATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAG 13666 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| |||||| || || | ||||| ||||| Sbjct 13667 CGACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCA 13726 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || || ||||||||||| | ||||| || | ||| || || Sbjct 13727 ACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAA 13786 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| || ||||| || ||||| || Sbjct 13787 TATTCAAAAGGAGTCGACCCTCCATCTTGT 13816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445450028441760