Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2636 201 1e-46 seq5746 165 1e-35 >seq2636 Length=44840 Score = 201 bits (222), Expect = 1e-46 Identities = 483/735 (66%), Gaps = 38/735 (5%) Strand=Plus/Plus Query 33452 ACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGA 33511 ||| ||||| || || || | || |||||||| ||||||||||||| ||| ||| Sbjct 42414 ACAGTTCATGCCAATCAGGTCCACAGGAAGAGCGTCAGTAAGAAATTCCACTTCGATGTC 42473 Query 33512 TACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGT 33569 || || | ||||| | |||| || | | ||| || | | || ||| Sbjct 42474 AACAGCTTCCCGCATAATCTTTTCAACGCGCTCCTTAGACGGCTTGTTTCTGATG--TGT 42531 Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || |||| | ||| || || || ||| || || || || | || |||| ||| || Sbjct 42532 TTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTG 42591 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || | ||| ||||| || |||||||| || | ||| || || || || || || Sbjct 42592 CTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGAC 42651 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||||||||||| | || ||||| ||||||||||||| || | |||| | || || Sbjct 42652 CCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTGGAC 42711 Query 33750 CT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 | |||| ||||| || | |||||||| |||||||| || |||||||| | ||| Sbjct 42712 TTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTT 42771 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCA---------------------TTACTAT-- 33843 | || ||||| || || ||| | | |||| | Sbjct 42772 TGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCGTTC 42831 Query 33844 --------CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33895 | |||| ||| |||||||| | ||| |||||||||||| ||||| ||||| Sbjct 42832 GATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATTTTC 42891 Query 33896 AATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAA 33955 || || ||||| || || ||||| || | || || | |||||| |||||| || || Sbjct 42892 GATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACTGAA 42951 Query 33956 TCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATG 34015 |||||| | | ||||||||| |||||||| || || || |||||||| || | |||| Sbjct 42952 GCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGACATA 43011 Query 34016 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 34075 | || || | || ||| | |||| | ||| ||| | || || | | Sbjct 43012 TGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCGCCAA 43071 Query 34076 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 34135 || ||||| || || ||||||||||| ||| | ||||| || || | | ||||||||| Sbjct 43072 GTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGATGTC 43131 Query 34136 ATGATATTGGATTGG 34150 |||||| ||||| || Sbjct 43132 ATGATACTGGATGGG 43146 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353 ||||||||||| || ||||| || || || ||||| |||||||||| ||||| |||||| Sbjct 42191 TGGTATTCACCAACGCGTTTCTCAAAGAAGTTAGTCTTTCCTTCCAGAGATATGTTTTCC 42250 Query 33354 ATGAAATCAAACGGATTGGT 33373 |||||||| || || || || Sbjct 42251 ATGAAATCGAATGGGTTTGT 42270 >seq5746 Length=27722 Score = 165 bits (182), Expect = 1e-35 Identities = 376/566 (66%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 63168 TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACAT 63227 |||||| || ||||| ||| || || || |||||| || | | | ||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280 Query 63228 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63287 || | ||| ||||| | ||||| ||| ||| | ||| ||| ||| || | ||| Sbjct 14281 TCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCA 14340 Query 63288 GGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63347 |||||||| ||||| || ||||| | | ||| |||||| || || ||||| Sbjct 14341 GGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTA 14400 Query 63348 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63407 || || | ||| || || || | ||||| ||||||| ||| || || | | Sbjct 14401 CGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCA 14460 Query 63408 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63467 || ||||| |||||||| |||||||| | ||| | || ||||| |||||||| | || | Sbjct 14461 CCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGC 14520 Query 63468 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGA 63527 ||||||| | ||| || ||| ||||| || || | ||| | || || || Sbjct 14521 ATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACCCTTGCTTCGT 14580 Query 63528 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63587 || || |||||| || || || || |||| || || | || || | || Sbjct 14581 ATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTTC 14640 Query 63588 AACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGAC 63647 || |||||||| ||||| || ||||| ||||| |||| | || || |||| || ||| Sbjct 14641 AAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGAC 14700 Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63707 ||||| | ||| || || || ||||||| ||| || || || || |||||||| ||| Sbjct 14701 ATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTTT 14760 Query 63708 TCAGAAAGTAGATTGTACGTCTCAAT 63733 | || | || | ||| |||| ||| Sbjct 14761 CCGGACATGAGTTCGTAAGTCTAAAT 14786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629370602703840