Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09-
25] 56,778 sequences; 539,424,504 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2636 201 1e-46
seq5746 165 1e-35
>seq2636
Length=44840
Score = 201 bits (222), Expect = 1e-46
Identities = 483/735 (66%), Gaps = 38/735 (5%)
Strand=Plus/Plus
Query 33452 ACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGA 33511
||| ||||| || || || | || |||||||| ||||||||||||| ||| |||
Sbjct 42414 ACAGTTCATGCCAATCAGGTCCACAGGAAGAGCGTCAGTAAGAAATTCCACTTCGATGTC 42473
Query 33512 TACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGT 33569
|| || | ||||| | |||| || | | ||| || | | || |||
Sbjct 42474 AACAGCTTCCCGCATAATCTTTTCAACGCGCTCCTTAGACGGCTTGTTTCTGATG--TGT 42531
Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629
|| |||| | ||| || || || ||| || || || || | || |||| ||| ||
Sbjct 42532 TTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTG 42591
Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689
|| || | ||| ||||| || |||||||| || | ||| || || || || || ||
Sbjct 42592 CTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGAC 42651
Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749
||||||||||| | || ||||| ||||||||||||| || | |||| | || ||
Sbjct 42652 CCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTGGAC 42711
Query 33750 CT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806
| |||| ||||| || | |||||||| |||||||| || |||||||| | |||
Sbjct 42712 TTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTT 42771
Query 33807 TCTATGGCATTAAAGAGATAGtttttttCA---------------------TTACTAT-- 33843
| || ||||| || || ||| | | |||| |
Sbjct 42772 TGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCGTTC 42831
Query 33844 --------CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33895
| |||| ||| |||||||| | ||| |||||||||||| ||||| |||||
Sbjct 42832 GATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATTTTC 42891
Query 33896 AATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAA 33955
|| || ||||| || || ||||| || | || || | |||||| |||||| || ||
Sbjct 42892 GATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACTGAA 42951
Query 33956 TCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATG 34015
|||||| | | ||||||||| |||||||| || || || |||||||| || | ||||
Sbjct 42952 GCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGACATA 43011
Query 34016 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 34075
| || || | || ||| | |||| | ||| ||| | || || | |
Sbjct 43012 TGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCGCCAA 43071
Query 34076 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 34135
|| ||||| || || ||||||||||| ||| | ||||| || || | | |||||||||
Sbjct 43072 GTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGATGTC 43131
Query 34136 ATGATATTGGATTGG 34150
|||||| ||||| ||
Sbjct 43132 ATGATACTGGATGGG 43146
Score = 82.4 bits (90), Expect = 1e-10
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353
||||||||||| || ||||| || || || ||||| |||||||||| ||||| ||||||
Sbjct 42191 TGGTATTCACCAACGCGTTTCTCAAAGAAGTTAGTCTTTCCTTCCAGAGATATGTTTTCC 42250
Query 33354 ATGAAATCAAACGGATTGGT 33373
|||||||| || || || ||
Sbjct 42251 ATGAAATCGAATGGGTTTGT 42270
>seq5746
Length=27722
Score = 165 bits (182), Expect = 1e-35
Identities = 376/566 (66%), Gaps = 0/566 (0%)
Strand=Plus/Plus
Query 63168 TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACAT 63227
|||||| || ||||| ||| || || || |||||| || | | | |||||
Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280
Query 63228 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63287
|| | ||| ||||| | ||||| ||| ||| | ||| ||| ||| || | |||
Sbjct 14281 TCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCA 14340
Query 63288 GGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63347
|||||||| ||||| || ||||| | | ||| |||||| || || |||||
Sbjct 14341 GGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTA 14400
Query 63348 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63407
|| || | ||| || || || | ||||| ||||||| ||| || || | |
Sbjct 14401 CGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCA 14460
Query 63408 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63467
|| ||||| |||||||| |||||||| | ||| | || ||||| |||||||| | || |
Sbjct 14461 CCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGC 14520
Query 63468 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGA 63527
||||||| | ||| || ||| ||||| || || | ||| | || || ||
Sbjct 14521 ATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACCCTTGCTTCGT 14580
Query 63528 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63587
|| || |||||| || || || || |||| || || | || || | ||
Sbjct 14581 ATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTTC 14640
Query 63588 AACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGAC 63647
|| |||||||| ||||| || ||||| ||||| |||| | || || |||| || |||
Sbjct 14641 AAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGAC 14700
Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63707
||||| | ||| || || || ||||||| ||| || || || || |||||||| |||
Sbjct 14701 ATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTTT 14760
Query 63708 TCAGAAAGTAGATTGTACGTCTCAAT 63733
| || | || | ||| |||| |||
Sbjct 14761 CCGGACATGAGTTCGTAAGTCTAAAT 14786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629370602703840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |