Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2636 167 2e-36 seq5746 150 2e-31 seq28812 93.3 4e-14 >seq2636 Length=44840 Score = 167 bits (184), Expect = 2e-36 Identities = 528/820 (64%), Gaps = 44/820 (5%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 ||||||||| | || ||||| ||||| | | ||| || ||||| || ||||| | | Sbjct 42346 ACTTTTTCAAAGCCCAACTCAGTTAAGAGACGATCGGCAACGAAACGAATGTACTGGGCC 42405 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | || ||| ||||| || || || ||||| |||| ||| | || | ||| ||| | Sbjct 42406 ATAAGACGACAGTTCATGCCAATCAGGTCCACAGGAAGAGCGTCAGTAAGAAATTCCACT 42465 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACT---TCCTTAGATGG--TGGAT 11606 || || | ||| || || || ||| || ||| |||||||| || || | Sbjct 42466 TCGATGTCAACAGCTTCCCGCATAATCT---TTTCAACGCGCTCCTTAGACGGCTTGTTT 42522 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 | || ||||| |||| | ||| ||||| ||| || | ||||| || | |||| Sbjct 42523 CTGATG--TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTA 42580 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 |||||||||| ||||| ||||| ||||| | || || || || | ||| || |||| Sbjct 42581 TTAGTTCATTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAG 42640 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| || || |||||||| | ||||| || || ||||| || |||| | ||| Sbjct 42641 ACGCAAACGACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTG 42700 Query 11787 CATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843 | | ||| | | |||||||| ||||||||||| ||||| || || | Sbjct 42701 GAAAAGTGGACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACAC 42760 Query 11844 ATTCCATTGTTTCTATAGCGTT----------------------AAATAAATGC------ 11875 | | |||| || || || |||||| || Sbjct 42761 AAGGTAGGGTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGA 42820 Query 11876 -ATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 ||| ||| || || | | ||| ||||| || | | | ||||||||| || Sbjct 42821 AATTACCGTTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAG 42880 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 ||||||||||| || || || || || |||||||| || || || || | | |||||| Sbjct 42881 TGAATATTTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACT 42940 Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || | || | ||| | | ||| ||||| || || || || || | ||||||||| Sbjct 42941 TCTTGACTGAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAAT 43000 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAA 12112 || || | || | || |||| || ||| | | ||| ||||| ||| |||| Sbjct 43001 GCGAGGACATATGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAG 43060 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATT 12172 || || | || || ||||| |||||||||||||| ||||| | | || || | Sbjct 43061 TCCTTCGCCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAAC 43120 Query 12173 TTCCAGATATCATGATACTTAATAGGGAAAATAACGAACC 12212 | |||||| |||||||||| || || | || ||||||| Sbjct 43121 TGCCAGATGTCATGATACTGGATGGGCATGATCACGAACC 43160 >seq5746 Length=27722 Score = 150 bits (166), Expect = 2e-31 Identities = 371/555 (67%), Gaps = 16/555 (3%) Strand=Plus/Plus Query 37918 TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACAT 37977 ||||||| | | || || || | ||| || | ||||| |||| ||| |||||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT---ACGCGTTCCATAAATAAA 38034 ||| ||| ||| || | ||| ||| ||| || ||| |||||| ||| ||||| Sbjct 14281 TCGTGAGGATCCATCAGTGTCCA--CTT-ATCGTTATCTTGCACGCGTCGCATGAATAAG 14337 Query 38035 TCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTC 38094 ||||| | ||| | || || | ||| | ||| ||| || || ||| Sbjct 14338 TCAGGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTC 14397 Query 38095 TTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 || | | ||| | ||| | | || || | |||||||||||| | ||||| | | Sbjct 14398 TTACGGA-GCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAA 14456 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 || || || | || | || ||||||| || || | ||||||| ||||| | | Sbjct 14457 GGCACCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCG 14516 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 | ||| || || | |||||| |||| || || | || | |||| |||||||||| Sbjct 14517 CAGCATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACCCTTGCT 14576 Query 38274 TCGTAT--ATT--ACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGC 38329 |||||| | | || | | ||| | || ||||| |||| ||||||||| | || | Sbjct 14577 TCGTATGCAGTGAACGTTTAGAC----CGATGCCACCAGCATTTTTTGATATAAGCGCAC 14632 Query 38330 ATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAAC 38389 | || || || || ||| | || || || || ||||||||||| || | || | ||| Sbjct 14633 ACTGCTTCAAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAAC 14692 Query 38390 AACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGA 38449 |||| ||||||||||||| || || || |||||||||| || || |||||||| | | Sbjct 14693 AACTGGACATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAA 14752 Query 38450 ACCATTTTTCCGACA 38464 |||| ||| | |||| Sbjct 14753 ACCACTTTCCGGACA 14767 >seq28812 Length=1987 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||||| || || ||||||||||| || || || || || |||||||| || || || || Sbjct 957 ATACATCTCCGAGTGAATATTTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTC 1016 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 ||| |||||| || | || | |||| | | ||| ||||| || || || ||| | Sbjct 1017 GGAA-TCTGTACTTCTTTACTGAAGCGTTCCACAAGATTTTCATTGACTATTCCGTCATT 1075 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATT--TTTCGT-CTTTAGTTAATTT 12096 | ||||||||||| || | || | || |||| | ||| |||||| | Sbjct 1076 TGCGGCAAAAAATGCGAGGACATATGAAATTAAGTGCTCCCGCCGTCCTTTAGCGA---- 1131 Query 12097 ATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 ||| | ||| |||| ||||| | || || ||||| ||||||||||||||| Sbjct 1132 TTCCTAGTCACCTAATTCTTTCGCCAAGTCAACTTCCTCAACGGTCCAAAAA 1183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468192276236320