Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2636 203 4e-47 seq5746 178 2e-39 seq28812 113 6e-20 >seq2636 Length=44840 Score = 203 bits (224), Expect = 4e-47 Identities = 415/619 (67%), Gaps = 36/619 (6%) Strand=Plus/Plus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||||| |||| | ||| || || || ||| || || || || | || |||| ||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 ||| || || | ||| ||||| || |||||||| || | ||| || || |||||||| Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 36322 || || |||||||||| || ||||| || |||||||||| || | |||| | || | Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG 42708 Query 36323 GCACT----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG--- 36375 | ||| |||| ||||| || | |||||||| |||||||| || |||||||| Sbjct 42709 G-ACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAG 42767 Query 36376 -----------CATTG---------TCTCTATA---GCATTAA-----AGAGATAGtttt 36407 ||||| || ||| | | | ||| ||||| | | Sbjct 42768 GGTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACC 42827 Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 ||| | || |||| ||| ||||| || | ||| |||||||||||| ||||| | Sbjct 42828 GTTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATAT 42887 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 |||| || || || || || || ||||| || | || || | ||||||||||||| || Sbjct 42888 TTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGAC 42947 Query 36528 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 36587 || |||||| | | ||||||||| ||||||||||| || || |||||||| || | | Sbjct 42948 TGAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGA 43007 Query 36588 CATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 36647 ||| | || || | || ||| |||| | ||| ||| | || || | Sbjct 43008 CATATGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCG 43067 Query 36648 ATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGA 36707 | || ||||| || || ||||||||||| ||| | ||||| || || | | ||||| Sbjct 43068 CCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGA 43127 Query 36708 TGTCATGATATTGAATTGG 36726 |||||||||| || || || Sbjct 43128 TGTCATGATACTGGATGGG 43146 >seq5746 Length=27722 Score = 178 bits (196), Expect = 2e-39 Identities = 381/567 (67%), Gaps = 2/567 (0%) Strand=Plus/Plus Query 65961 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 66020 |||||| ||| ||||| ||| || || || |||||| || | | || ||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280 Query 66021 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 66080 || | ||| ||||| | ||||| ||| ||| | ||| ||| ||| || | ||| Sbjct 14281 TCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCA 14340 Query 66081 GGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 66140 |||||||| ||||| || | ||| | | ||| |||||| || || ||||| Sbjct 14341 GGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTA 14400 Query 66141 TTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACT 66200 || || | ||| || || || ||||| ||||||| ||| || || | | Sbjct 14401 CGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCA 14460 Query 66201 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 66260 || ||||| |||||||| |||||||| | ||| | || ||||| |||||||| | || | Sbjct 14461 CCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGC 14520 Query 66261 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC-ACG 66319 ||||||| | |||||||||| ||||| || || | ||| | | || ||||| || Sbjct 14521 ATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACC-CTTGCTTCG 14579 Query 66320 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 66379 || || |||||| || || || || |||| || || | || || | || Sbjct 14580 TATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTT 14639 Query 66380 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 66439 || || ||||| |||||||| || || |||||| |||| | || || |||| || || Sbjct 14640 CAAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGA 14699 Query 66440 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 66499 |||||| | || || || || ||||||| ||| || || || || |||||||| || Sbjct 14700 CATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTT 14759 Query 66500 TTCAGAAAGTAGATTGTACGTCTCAAT 66526 | | || | || | ||| |||| ||| Sbjct 14760 TCCGGACATGAGTTCGTAAGTCTAAAT 14786 >seq28812 Length=1987 Score = 113 bits (124), Expect = 6e-20 Identities = 129/172 (75%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 || |||| ||| | || || | ||| |||||| ||||| ||||| ||||| || || Sbjct 928 TCATTAATATACATGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCA 987 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 || || || || ||||| || | || |||| ||||||||||||| ||| || ||||| Sbjct 988 ATCTGGAAGCCATAGAAGCAACGGGCTTCGG-AATCTGTACTTCTTTACTGAAGCGTTCC 1046 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 36590 | | ||||||||| |||||||||||| | || |||||||| || | |||| Sbjct 1047 ACAAGATTTTCATTGACTATTCCGTCATTTGCGGCAAAAAATGCGAGGACAT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657705678309520