Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2636 114 9e-21 >seq2636 Length=44840 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||||| | |||||||| || || || || || | ||||| ||||| |||||| | || Sbjct 42695 CGTCTAGTTGCCTTTGCTGCCGTAGAGGGGGTTTTCTTTTCCGGGTCGTTTGCGTCTATC 42636 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||| ||||||| ||| ||| ||||| || ||| | || ||| || | || ||| Sbjct 42635 TTCTGGTTGAAGAAGCGTGGGCTTATGCCGGGATTGACATTCAGCAATGAACTAATAAGC 42576 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 ||||| ||||| || ||| ||||||||||||| | |||| | || || |||||| Sbjct 42575 CGTGATGAAGGGCTTCACACTGACTTTGCTTGTCTTTTGTTCAAACACATCAGAAACAAG 42516 Query 22921 CCGTGTCAGGA 22931 |||| | |||| Sbjct 42515 CCGTCTAAGGA 42505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355987092805534