Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2636 230 3e-55 seq5746 187 4e-42 seq28812 118 2e-21 >seq2636 Length=44840 Score = 230 bits (254), Expect = 3e-55 Identities = 489/734 (67%), Gaps = 36/734 (5%) Strand=Plus/Plus Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 ||| ||||| || || || | || |||||||| ||||||||||||| ||| ||| Sbjct 42414 ACAGTTCATGCCAATCAGGTCCACAGGAAGAGCGTCAGTAAGAAATTCCACTTCGATGTC 42473 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAAATGTT 49948 || || || ||||| | |||| || | | ||| | | | | | |||| Sbjct 42474 AACAGCTTCCCGCATAATCTTTTCAACGCGCTCCTTAGACGGCTTGTTTCTG-ATGTGTT 42532 Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 | |||| | ||| || || || ||| || || || || | || |||||||| ||| Sbjct 42533 TGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTGC 42592 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068 || || | ||| ||||| || |||||||| || | ||| || || |||||||| |||| Sbjct 42593 TGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGACC 42652 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC 50128 | |||||||| | || ||||| || ||||||||||| || | |||| | || ||| Sbjct 42653 CGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTGGACT 42712 Query 50129 T---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 | |||| ||||| || | |||||||| |||||||| || |||||||| | |||| Sbjct 42713 TCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTTT 42772 Query 50186 CTATGGCATTAAAGAGATAGtttttttCA---------------------TTACTAT--- 50221 || ||||| || || ||| | | |||| | Sbjct 42773 GTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCGTTCG 42832 Query 50222 -------CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 50274 | |||| ||| |||||||| | ||| |||||||||||| ||||| ||||| Sbjct 42833 ATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATTTTCG 42892 Query 50275 ATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAAT 50334 || || ||||| || || ||||| || | || || | |||||| |||||| || || Sbjct 42893 ATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACTGAAG 42952 Query 50335 CGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGT 50394 ||||| | | ||||||||| ||||||||||| || || |||||||| || | |||| | Sbjct 42953 CGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGACATAT 43012 Query 50395 TTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA 50454 || || || || ||| | |||| | ||| ||| | || || | | Sbjct 43013 GAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCGCCAAG 43072 Query 50455 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 50514 || ||||| || || ||||||||||| ||| | ||||| || || | | |||||||||| Sbjct 43073 TCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGATGTCA 43132 Query 50515 TGATATTGGATTGG 50528 ||||| ||||| || Sbjct 43133 TGATACTGGATGGG 43146 >seq5746 Length=27722 Score = 187 bits (206), Expect = 4e-42 Identities = 381/566 (67%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||||||| ||| || || ||| || || || |||||| |||| || || ||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 |||| |||| ||||| | ||||| | | ||| | || ||| ||| || | ||| Sbjct 14281 TCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCA 14340 Query 79960 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 80019 |||||||| ||||| || ||||| | | ||| ||||| || || ||||| Sbjct 14341 GGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTA 14400 Query 80020 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 80079 || || | ||| || || || | ||||| ||||||| ||| || || | | Sbjct 14401 CGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCA 14460 Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139 || || || |||||||| |||||||| | ||| | || ||||| |||||||| | || | Sbjct 14461 CCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGC 14520 Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 ||||||| | |||||||||| ||||| || || | ||| | | || || || Sbjct 14521 ATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACCCTTGCTTCGT 14580 Query 80200 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 80259 || || |||||| || || || || |||| || || | || || | || Sbjct 14581 ATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTTC 14640 Query 80260 AACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGAC 80319 || || ||||| |||||||| ||||| ||||| |||| | || || |||| || ||| Sbjct 14641 AAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGAC 14700 Query 80320 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 80379 ||||| | || || || || ||||||| ||| || || || || |||||||| ||| Sbjct 14701 ATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTTT 14760 Query 80380 TCAGACAGTAGATTGTACGTCTCAAT 80405 | |||| || | ||| |||| ||| Sbjct 14761 CCGGACATGAGTTCGTAAGTCTAAAT 14786 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGC--ATCCGCATATTGTATTATTTCAGTGC 79678 || || |||||||||||||| | ||||| || | | | |||| | ||| || |||| Sbjct 13930 GACGCGAGATTACAAACGGCAATCTCATCAGGCGAACTG--TATTCAACTATCTCTGTGC 13987 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 ||||||| || ||||| ||||| | || ||| |||||| ||| || ||||| | Sbjct 13988 AGAGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGATTAGACTTGCGATTGCACGCGT 14047 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 79790 |||| || || ||||| ||| | ||||| || || || | ||| ||||| || Sbjct 14048 CCTTGTACAGCATGAAAGGATTGCCAGTCTCGATTTGCGCTTCAATAATAGC 14099 >seq28812 Length=1987 Score = 118 bits (130), Expect = 2e-21 Identities = 130/172 (76%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || |||| ||| | ||||| | ||| |||||| ||||| ||||| ||||| || || Sbjct 928 TCATTAATATACATGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCA 987 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 ||||| || || ||||| || | || |||| |||||| |||||| ||| || ||||| Sbjct 988 ATCTGGAAGCCATAGAAGCAACGGGCTTCGG-AATCTGTACTTCTTTACTGAAGCGTTCC 1046 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 50392 | | ||||||||| |||||||||||| | || |||||||| || | |||| Sbjct 1047 ACAAGATTTTCATTGACTATTCCGTCATTTGCGGCAAAAAATGCGAGGACAT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717759026675920