Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2636 122 8e-23 >seq2636 Length=44840 Score = 122 bits (134), Expect = 8e-23 Identities = 380/591 (64%), Gaps = 37/591 (6%) Strand=Plus/Plus Query 13857 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13916 ||||| || | | ||| ||||| ||| ||||| || ||||| | || || ||||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 13917 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAAT 13976 || ||||| ||||| ||||| | || || || || ||||| || || | ||||| Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 13977 GACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14036 |||||||||||||| | ||||| || |||||||| || | || || ||| ||| | Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG 42708 Query 14037 GCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 14096 | || || |||||||| ||||| |||| || || || | | || | Sbjct 42709 GACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGG 42768 Query 14097 GTTTCAATAGCATT----------------------AAATAA---------ATATTCC-- 14123 |||| | ||||| |||||| | ||| | Sbjct 42769 GTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCG 42828 Query 14124 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 14183 ||| || || ||| ||| || ||||| || || | ||||||||| ||||| || Sbjct 42829 TTCGATTGGGTCCTT--AATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATA 42886 Query 14184 TTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GA 14242 ||||| || || ||||| || ||||| ||||| | ||||||| |||||||| || Sbjct 42887 TTTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGA 42946 Query 14243 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14302 | || | ||| | | ||||||||||||||| || || || || ||||||||||| | Sbjct 42947 CTGAAG-CGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAG 43005 Query 14303 TATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTT 14362 | | | ||| |||| | ||| | | || || || ||| || ||| ||||| Sbjct 43006 GACATATGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTT 43065 Query 14363 AGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | | || ||||| ||||| |||||||| ||| || || || || || Sbjct 43066 CGCCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTA 43116 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 || ||||||| ||| | ||| |||||||||||||| || |||||||| ||||| |||||| Sbjct 42191 TGGTATTCACCAACGCGTTTCTCAAAGAAGTTAGTCTTTCCTTCCAGAGATATGTTTTCC 42250 Query 13644 ATAAAATCAAATGGATTT 13661 || ||||| ||||| ||| Sbjct 42251 ATGAAATCGAATGGGTTT 42268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479387525045200