Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2636 201 2e-46 seq5746 192 8e-44 seq28812 113 6e-20 >seq2636 Length=44840 Score = 201 bits (222), Expect = 2e-46 Identities = 415/620 (67%), Gaps = 38/620 (6%) Strand=Plus/Plus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||||| |||| | ||| || || || ||| || || ||||| | || |||| ||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 ||| || || | ||| ||||| || |||||||| || | ||| || ||||||||||| Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 || || |||||||| | || ||||| || |||||||||| || | |||| | || | Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG 42708 Query 42230 GCACT----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 42285 | ||| |||| ||||| || | |||||||| |||||||| || |||||||| | Sbjct 42709 G-ACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAG 42767 Query 42286 CGTTTCTATGGCATTAAAGAGATAGtttttttCA---------------------TTACT 42324 |||| || ||||| || || ||| | | |||| Sbjct 42768 GGTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACC 42827 Query 42325 AT----------CTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 | | |||| ||| |||||||| | ||| ||||||||| || ||||| | Sbjct 42828 GTTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATAT 42887 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 |||| || || ||||| || || ||||| || | ||| || | || |||||||||| || Sbjct 42888 TTTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGAC 42947 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 || ||||| | | |||||| || ||||||||||| || || |||||||| || | | Sbjct 42948 TGAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGA 43007 Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CCAATCATTGATATCTTTA 42553 ||| | || || | || ||| ||| || | ||| ||| ||| | || || Sbjct 43008 CATATGAAATGAAGTGCTTCTCG-CCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTC 43066 Query 42554 GATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAG 42613 | | || ||||| || || ||||||||||| || | ||||| || || | | |||| Sbjct 43067 GCCAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAG 43126 Query 42614 ATATCATGATATTGAATTGG 42633 || |||||||| || || || Sbjct 43127 ATGTCATGATACTGGATGGG 43146 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 ||||||||||| || ||||| || || || |||||||||||||||| ||||| |||||| Sbjct 42191 TGGTATTCACCAACGCGTTTCTCAAAGAAGTTAGTCTTTCCTTCCAGAGATATGTTTTCC 42250 Query 41837 ATGAAATCAAACGGATTGGT 41856 |||||||| || || || || Sbjct 42251 ATGAAATCGAATGGGTTTGT 42270 >seq5746 Length=27722 Score = 192 bits (212), Expect = 8e-44 Identities = 382/566 (67%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982 ||||||| ||| || || ||| || || || |||||| || | || || ||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 || | ||| ||||| || ||||| | | ||| | || ||| ||| || | ||| Sbjct 14281 TCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCA 14340 Query 72043 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102 |||||||| ||||| || ||||| | | ||| ||||| || || ||||| Sbjct 14341 GGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTA 14400 Query 72103 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 72162 || || | ||| || || || | ||||| ||||||| ||| || || | | Sbjct 14401 CGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCA 14460 Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222 || ||||| |||||||| |||||||| | ||| | || ||||| |||||||| | || | Sbjct 14461 CCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGC 14520 Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282 ||||||| | |||||||||| | ||||| || || | ||| | | || || || Sbjct 14521 ATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACCCTTGCTTCGT 14580 Query 72283 ATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 72342 || | || |||||| || || || || |||| || || | || || | || Sbjct 14581 ATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTTC 14640 Query 72343 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 72402 || || ||||| |||||||| || || |||||| |||| | || || |||| || ||| Sbjct 14641 AAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGAC 14700 Query 72403 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 72462 ||||| | || || || || ||||||| ||| || || || || |||||||| ||| Sbjct 14701 ATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTTT 14760 Query 72463 TCAGACAGTAGATTGTACGTCTCAAT 72488 | |||| || | ||| |||| ||| Sbjct 14761 CCGGACATGAGTTCGTAAGTCTAAAT 14786 >seq28812 Length=1987 Score = 113 bits (124), Expect = 6e-20 Identities = 129/172 (75%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || |||| ||| | ||||| | ||| |||||| || || ||||| ||||| || || Sbjct 928 TCATTAATATACATGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCA 987 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 ||||| || || ||||| || | ||| |||| || |||||||||| ||| || ||||| Sbjct 988 ATCTGGAAGCCATAGAAGCAACGGGCTTCGG-AATCTGTACTTCTTTACTGAAGCGTTCC 1046 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 42497 | | |||||| || |||||||||||| | || |||||||| || | |||| Sbjct 1047 ACAAGATTTTCATTGACTATTCCGTCATTTGCGGCAAAAAATGCGAGGACAT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670662875731280