Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq7809 100 3e-16 seq5746 93.3 4e-14 >seq7809 Length=21078 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || | ||| | || || || ||||| || ||||| ||| Sbjct 13379 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13320 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| |||||||||||||| |||||| | ||||| || || || || || || Sbjct 13319 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13260 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||||| ||| | | || | || ||| | ||||| || Sbjct 13259 GATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAAC 13200 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | ||| ||||| |||||||| || || || || ||||| Sbjct 13199 TTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||| ||| | |||||| ||||| || ||||||||||| | |||| || ||| Sbjct 14044 ACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTCG 13985 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||||||||| || |||| || | ||| ||||| || || || ||||| ||||| Sbjct 13984 AGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTGG 13925 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| || | | || | || ||| |||| || || || | ||| | || ||| Sbjct 13924 ATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTG 13865 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || ||||| || ||||| Sbjct 13864 CCTGTCAACGTCTTGACGAAAATCTGCAT 13836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || | ||| | || || || ||||| || ||||| ||| Sbjct 13607 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13548 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| |||||||||||||| |||||| | ||||| || || || || || || Sbjct 13547 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13488 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||||| || | | || | || ||| |||| || || Sbjct 13487 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13428 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || ||||| ||||| || || ||||| || ||||| Sbjct 13427 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || | ||| | || || || ||||| || ||||| ||| Sbjct 13835 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13776 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||||||||||| |||||| | ||||| || || || || || || Sbjct 13775 AAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13716 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||||| || | | || | || ||| |||| || || Sbjct 13715 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13656 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || ||||| ||||| || || ||||| || ||||| Sbjct 13655 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 >seq5746 Length=27722 Score = 93.3 bits (102), Expect = 4e-14 Identities = 207/308 (67%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 157279 CTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCG--TTGAGCTTAGGA 157336 |||||| | | ||||| | | |||||| || || || | |||| | || || ||| Sbjct 14220 CTCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCT--GGA 14277 Query 157337 CACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATA 157396 ||||||| |||| ||| | || ||| || |||| |||| |||||| ||| |||| Sbjct 14278 CACTCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAG 14337 Query 157397 TCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTT 157456 || |||| ||| | ||| | | | |||||| ||| |||| || || |||| |||| Sbjct 14338 TCAGGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTC 14397 Query 157457 CGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGG 157516 ||| | | | || | || ||||| ||||| ||||| | ||| | ||| | Sbjct 14398 TTACGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAG 14457 Query 157517 GCTCCTTTTCGCTTG---CCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGC 157573 || || |||||| ||||| ||||| |||| || | | || ||| |||| ||| Sbjct 14458 GCACCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGC 14517 Query 157574 AGCATTGG 157581 |||||||| Sbjct 14518 AGCATTGG 14525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506654559204960