Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7809 98.7 7e-16 >seq7809 Length=21078 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| ||||| || || ||||| || ||||| ||| || | | | ||| Sbjct 13363 AAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCT 13304 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||||||||| | |||| || |||||||| || ||||| |||||||| Sbjct 13303 TCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCC 13244 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| ||| || ||| | || || | |||||| ||| || || || ||||| || Sbjct 13243 TGGATTTTAGCT-TTGACATTCTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTAATCGT 13185 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| || || ||||| || ||||| Sbjct 13184 TTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| ||||| || || ||||| || ||||| ||| || | | | ||| Sbjct 13591 AAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCT 13532 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||||||||| | |||| || |||||||| || ||||| |||||||| Sbjct 13531 TCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCC 13472 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| ||| | || || | ||||| || || || | ||||| ||| Sbjct 13471 TGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTT 13412 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||| || || || ||||| ||||| Sbjct 13411 TTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| ||||| || || ||||| || ||||| ||| || | | | ||| Sbjct 13819 AAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCATCT 13760 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||||||||| | |||| || |||||||| || ||||| |||||||| Sbjct 13759 TCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCC 13700 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| ||| | || || | ||||| || || || | ||||| ||| Sbjct 13699 TGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTT 13640 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||| || || || ||||| ||||| Sbjct 13639 TTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||| || || || ||||| || ||||||||||| || | | | || || Sbjct 14044 ACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTCG 13985 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || ||| | || | | |||||| || || |||||||| ||||| Sbjct 13984 AGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTGG 13925 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || || | ||||| || || |||| ||||| ||||| Sbjct 13924 ATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTG 13865 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| || || || ||||| ||||| Sbjct 13864 CCTGTCAACGTCTTGACGAAAATCTGCAT 13836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361928578558098