Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq15210 82.4 5e-11 >seq15210 Length=8810 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||||| ||| ||| ||||||||||||||||| | ||| |||| || Sbjct 1537 ACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGACAGAGTACGTCCATCTTCG 1478 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||| || || ||||| | ||| || ||||| |||| | ||| ||||||||| | Sbjct 1477 AGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGGATACCCTCTTTATCTTGA 1418 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || || || | | | | || | ||||| || |||| || || || || Sbjct 1417 ATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTC 1358 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | ||||| |||||||| |||||| Sbjct 1357 CCTGTGAGGGTCTTGACAAATATCTGCATG 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354532100331144