Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2636 96.9 3e-15 >seq2636 Length=44840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 200/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||| ||||| || | | ||||||||| || ||||||||||| || || || || Sbjct 42844 AATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATTTTCGATTGCAATCTG 42903 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538 ||| ||||| || || | || || | | ||| ||||| || | || | |||| | | Sbjct 42904 GAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACT-GAAGCGTTCTACAA 42962 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt 13598 ||||| |||||||| ||||| || || |||||||| || || | | ||| || | Sbjct 42963 GATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGACATATGAAATGAAGT 43022 Query 13599 ttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCT 13658 || ||| || | | ||| || || || || | || || || |||| Sbjct 43023 GCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCGCCAAGTCAACTTCCT 43082 Query 13659 CAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATA 13713 ||||||||||||| ||||| || |||||||| || | | ||| || || | ||| Sbjct 43083 CAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGATGTCATGATA 43137 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 13136 TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCG 13195 || || |||| | ||| ||||| ||| ||| | |||||||| | |||||||| || Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 13196 TTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAAC 13255 || ||||| | |||||||||||||| || || || | ||| || |||| |||||| Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 13256 GAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 || || ||||| || | || || || || ||||| || Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGC 42686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430684167990756