Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2636 183 7e-41 seq15210 159 8e-34 seq7809 152 1e-31 seq4071 152 1e-31 seq28812 104 5e-17 seq13246 86.0 1e-11 >seq2636 Length=44840 Score = 183 bits (202), Expect = 7e-41 Identities = 419/629 (67%), Gaps = 44/629 (7%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 || ||||| | || || ||| || ||| || ||| | | ||||| |||| || ||| Sbjct 43158 TTCGTGATCATGCCCATCCAGTATCATGACATCTGGCAGTTTTACAAGAAGGCGGTGGCT 43099 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || |||||||| || || ||||| || || | | |||||| || ||| || || Sbjct 43098 TCATTTTGGACCGTTGAGGAAGTTGACTTGGCGAAGGACTTAGGTGACTGGGAATCCCTA 43039 Query 268823 AAACCAGAAGA-AAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGG 268881 || | || ||| | || || || ||| | || || |||||||| | || || || Sbjct 43038 AAGGACGGCGAGAAGCAC-TTCATTTCATATGTCCTCGCATTTTTTGCCGCGAGCGACGG 42980 Query 268882 TATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAG 268941 || ||||| |||||||| ||||| ||| ||||||| ||||||||||| |||||| | Sbjct 42979 AATAGTTAATGAAAATCTTGTAGAACGCTTCAGTCAAGAAGTACAGATTCCGGAAGCCCG 42920 Query 268942 ATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATT 269001 || || || || |||||||| || || ||||||||||| || || ||||| ||| | Sbjct 42919 TTGCTTCTATGGCTTCCAGATTGCAATCGAAAATATTCACTCGGAAATGTATTCTCTCCT 42860 Query 269002 AATAGATACTTATATAGATGATAACAACGAAAAGAAAAGAC---------TATTT----- 269047 || ||||| ||||| | || | |||| | || | ||||| Sbjct 42859 CATCGATACGTATATTAAGGACCCAATCGAACGGTAATTTCTCTGGCTCTTATTTCGTTT 42800 Query 269048 ------------TCTTCTATGAG-----AACTATGGACTGTGTGAGaaaaaaaTCTGAAT 269090 | ||| ||| | ||| | ||||||| || || |||| | Sbjct 42799 TTAGTGACTTCCTGTTCAATGCGGTACAAACCCTACCTTGTGTGAAGAAGAAGGCTGATT 42740 Query 269091 GGGCTCTGAAATGGAT-----AAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTT 269145 |||| || |||||||| | ||| || | | || | ||| | ||||||| || Sbjct 42739 GGGCACTTAAATGGATTGGTGACTCGA-AGTCCACTTTTC-CAGAGCGTCTAGTTGCCTT 42682 Query 269146 TGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA 269205 ||| || ||||| || | |||||||| ||||| ||||| ||||||| ||||||||||| Sbjct 42681 TGCTGCCGTAGAGGGGGTTTTCTTTTCCGGGTCGTTTGCGTCTATCTTCTGGTTGAAGAA 42622 Query 269206 AAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG--T 269263 | || |||||||| ||||| || ||| || ||| | |||||| | || ||||| | Sbjct 42621 GCGTGGGCTTATGCCGGGATTGACATTCAGCAATGAACTAATAAGCCGTGATGAAGGGCT 42562 Query 269264 TTACACTGCGACTTCGCTTGTTTATTATT 269292 | ||||| ||||| |||||| | || || Sbjct 42561 TCACACT--GACTTTGCTTGTCTTTTGTT 42535 >seq15210 Length=8810 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || || || || |||| || || || || ||||||||||| || || ||||| | Sbjct 1546 AGTCTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGACAGAGTACGT 1487 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || ||||| ||||| || || |||| |||||| || ||||| || || ||| Sbjct 1486 CCATCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAGGGATACCCTCT 1427 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| |||||||| || |||||||| || | || || ||| || ||||| || || Sbjct 1426 TTATCTTGAATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGGGTT 1367 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || || || |||||||||||||| Sbjct 1366 ATAGTCTTCCCTGTGAGGGTCTTGACAAATATCTGCAT 1329 >seq7809 Length=21078 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || |||||||| ||||| || || || | || ||||| Sbjct 13360 ACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCG 13301 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| ||||||||||| || | |||||| || || || ||||| ||||| ||||| Sbjct 13300 AGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGG 13241 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| ||||| || | | ||||||||||| || || | ||||| || || Sbjct 13240 ATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAACTTCCAAAGTAATCGTTTTG 13181 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| |||||||| Sbjct 13180 CCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||||||| | |||||| ||||||||||| || || ||||| || || | || || Sbjct 14047 AGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCC 13988 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| || || || ||||| || |||||||| || || |||||||| || ||| Sbjct 13987 TCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCC 13928 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || ||||| || | | ||||| || || |||||||| ||||| || Sbjct 13927 TGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTT 13868 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || || || |||||||| Sbjct 13867 TTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13836 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || |||||||| ||||| || || || | || ||||| Sbjct 13588 ACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTGCGGCCATCTTCG 13529 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| ||||||||||| || | |||||| || || || ||||| ||||| ||||| Sbjct 13528 AGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGG 13469 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || ||||| || | | ||||| || || ||||| || ||||| || || Sbjct 13468 ATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTG 13409 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || |||||||| Sbjct 13408 CCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || |||||||| ||||| || || || | || ||||| Sbjct 13816 ACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGGGTACGGCCATCTTCG 13757 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| ||||||||||| || | |||||| || || || ||||| ||||| ||||| Sbjct 13756 AGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGGATTCCCTCTTTGTCCTGG 13697 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || ||||| || | | ||||| || || ||||| || ||||| || || Sbjct 13696 ATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCCAGAGTAATTGTTTTG 13637 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || |||||||| Sbjct 13636 CCTGTCAACGTCTTGACGAAAATCTGCAT 13608 >seq4071 Length=35431 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || |||||||||||||| ||||| || || || | || || Sbjct 35053 AGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCATCC 35112 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || ||||| || || || |||||||| || || || || || ||||| ||| Sbjct 35113 TCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCC 35172 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | | || || ||||| ||||| | ||||||||| Sbjct 35173 TGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACCTCCAACGTAATAGTC 35232 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| || ||||| |||||||| Sbjct 35233 TTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 >seq28812 Length=1987 Score = 104 bits (114), Expect = 5e-17 Identities = 115/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 || || || ||| | || || |||||||| | | ||| || || || || |||||||| Sbjct 1108 TTAATTTCATATGTCCTCGCATTTTTTGCCGCAAATGACGGAATAGTCAATGAAAATCTT 1049 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || || ||| || |||| ||||||||||| |||||| | || || || || |||||| Sbjct 1048 GTGGAACGCTTCAGTAAAGAAGTACAGATTCC-GAAGCCCGTTGCTTCTATGGCTTCCAG 990 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTA 268992 || || || ||||||||||| || |||||||| Sbjct 989 ATTGCAATCGAAAATATTCACTCGGAGATGTA 958 >seq13246 Length=10935 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || || ||||| || || || || || ||||| || || ||||| || || ||||| Sbjct 1 ATCAGTCTTTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTC 60 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | | || || || || ||||| || ||||||||||| || || || || || ||| Sbjct 61 TCGATTGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTGAGCGTCTTGACA 120 Query 104549 AATATCTGCATTTTG 104563 || ||||||||| || Sbjct 121 AAGATCTGCATTGTG 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150560794364824