Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4529 205 1e-48 seq491 140 5e-29 seq11662 136 6e-28 seq949 91.5 2e-14 >seq4529 Length=32950 Score = 205 bits (226), Expect = 1e-48 Identities = 209/270 (77%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || |||||||||| | |||| || || ||||||||||| ||||||||||| || | Sbjct 29154 CGCCAAACGTCATCGCA-AGGTCTTGCGTGACAACATCCAAGGCATCACCAAGCCTGCCA 29096 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| || ||||| ||||||| | |||| || |||| Sbjct 29095 TCCGTCGTCTTGCACGCCGTGGTGGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGA 29036 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | |||| | || |||| || ||| |||||||| ||| || || || |||| Sbjct 29035 CTCGCGGTGTTCTCAAAGTCTTTCTGGAGAACGTTATCCGTGACGCCGTCACGTACACCG 28976 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || || || |||||||||||| | ||||| |||||||||| ||||| ||||||| Sbjct 28975 AGCATGCCAAGCGAAAGACTGTCACCGCAATGGACGTCGTCTATGCCTTGAAGCGTCAAG 28916 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||||| | || ||||| || |||||| Sbjct 28915 GCCGTACCCTCTACGGTTTCGGTGGTTAAT 28886 >seq491 Length=88590 Score = 140 bits (154), Expect = 5e-29 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | | || |||||||||||||||||||| ||||| || ||| Sbjct 41043 GCCAAGCGGCATCGGAAGGTTTTGCGTGATAACATCCAAGGAATCACTAAGCCCGCAATC 40984 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| |||||||| || || || |||||| | || || | | || ||||| | Sbjct 40983 AGGCGTCTTGCTCGTCGAGGAGGCGTGAAGCGTATATCAGGCCTTATATACGAAGAAACG 40924 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||||||| |||||| | ||||| || Sbjct 40923 CGCGGAGTTCTGAAGGTATTCCTGGAGAATGTTATCCGTGATGCCGTAACGTATACTGAA 40864 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | |||||||| || | |||||| | || || || ||||| || ||||| Sbjct 40863 CATGCCAAGAGGAAGACTGTAACGGCTATGGATGTGGTTTACGCTTTGAAGCGCCAAGGG 40804 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| |||| ||||| || Sbjct 40803 CGTACCCTTTACGGTTTCGG 40784 >seq11662 Length=13130 Score = 136 bits (150), Expect = 6e-28 Identities = 190/268 (71%), Gaps = 9/268 (3%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||||||||| || || || ||||| |||| ||||||||||| || ||| Sbjct 10825 GCGAAGCGTCATCGCAGCGTCCTGCGTGACAACATTCAAGTCATCACCAAGCCCGCCATC 10766 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| | || |||||||| || |||||| || |||| || |||| Sbjct 10765 CGTCGTCTTGTGCGCCGTGGTGGTGTGAAGCGTATC---------ATCTACGAGGAGACC 10715 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | ||| |||||| | ||| ||| ||| |||||| || || ||| || Sbjct 10714 CACGGCGTTCTCAAGGTCTTCCACGAGAATGTTGTCCGTGATGCCATCACATACACCTAG 10655 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 | || || || ||||| ||||| ||||| |||||||||| ||||| ||||||||| Sbjct 10654 AATGCCAAGCGAAAGACCATCACCATTATGGACGTCGTCTATGCCTTGAAGCGTCAAGGC 10595 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | || |||| ||| |||||| Sbjct 10594 TGCACCTTGTACGGTTATGGTGGTTAAT 10567 >seq949 Length=70994 Score = 91.5 bits (100), Expect = 2e-14 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 16436 AAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494 |||||||||||| || ||| | || || || |||||||| || || ||||| || ||||| Sbjct 52868 AAGCGTCATCGCAAGGTCT-TGCGTGACAAAATCCAAGGCATAACAAAGCCTGCCATCCG 52926 Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 |||||| || || |||||||| | |||||| |||||| | |||| | |||| || Sbjct 52927 TCGTCTTGCACGCCGTGGTGGTCTGAAGCGTACCTCTGGTGTCATCTACAAGGAGACCCG 52986 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 ||| | ||| |||| || ||| || ||||| ||| || Sbjct 52987 CAGGGTTCTCAAGGTCTTTCTGGAGAACGCTATCCGTGACGC 53028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79023287477154