Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2636 109 6e-19 >seq2636 Length=44840 Score = 109 bits (120), Expect = 6e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 ||||| |||| | ||| ||||| ||| || | |||||||| | ||||||| |||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAAT 21580 || ||||| || || ||||| | || | ||| || ||||| || || |||||||| Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTA 21623 | || |||||||||| ||||| ||||||||||| ||||||| Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTA 42691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531523296704720