Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2636 206 3e-48 seq5746 174 2e-38 seq28812 127 3e-24 >seq2636 Length=44840 Score = 206 bits (228), Expect = 3e-48 Identities = 484/734 (66%), Gaps = 36/734 (5%) Strand=Plus/Plus Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 ||| ||||| || || || | || |||||||| ||||||||||||| ||| ||| Sbjct 42414 ACAGTTCATGCCAATCAGGTCCACAGGAAGAGCGTCAGTAAGAAATTCCACTTCGATGTC 42473 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAAATGTT 33292 || || || ||||| | |||| || | | ||| | | | | | |||| Sbjct 42474 AACAGCTTCCCGCATAATCTTTTCAACGCGCTCCTTAGACGGCTTGTTTCTG-ATGTGTT 42532 Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 | |||| | ||| || || || ||| || || || || | || |||||||| ||| Sbjct 42533 TGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTGC 42592 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412 || || | ||| ||||| || |||||||| || | ||| || || || || || || | Sbjct 42593 TGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGACC 42652 Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33472 | |||||||| | || ||||| ||||||||||||| || | |||| | || || Sbjct 42653 CGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTGGACT 42712 Query 33473 T---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 | |||| ||||| || | |||||||| |||||||| || |||||||| | |||| Sbjct 42713 TCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTTT 42772 Query 33530 CTATGGCATTAAAGAGATAGtttttttCA---------------------TTACTAT--- 33565 || ||||| || || ||| | | |||| | Sbjct 42773 GTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCGTTCG 42832 Query 33566 -------CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 33618 | |||| ||| |||||||| | ||| |||||||||||| ||||| ||||| Sbjct 42833 ATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATTTTCG 42892 Query 33619 ATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAAT 33678 || || ||||| || || ||||| || | || || | ||||||||||||| || || Sbjct 42893 ATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACTGAAG 42952 Query 33679 CGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGT 33738 ||||| | | ||||||||| ||||||||||| || || |||||||| || | |||| | Sbjct 42953 CGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGACATAT 43012 Query 33739 TTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA 33798 || || | || ||| | |||| | ||| ||| | || || | | Sbjct 43013 GAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCGCCAAG 43072 Query 33799 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCA 33858 || ||||| || || ||||||||||| ||| | ||||| || || | | |||||||||| Sbjct 43073 TCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGATGTCA 43132 Query 33859 TAATATTGGATTGG 33872 | ||| ||||| || Sbjct 43133 TGATACTGGATGGG 43146 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 33016 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33075 ||||||||||| || ||||| || || || ||||| |||||||||| ||||| |||||| Sbjct 42191 TGGTATTCACCAACGCGTTTCTCAAAGAAGTTAGTCTTTCCTTCCAGAGATATGTTTTCC 42250 Query 33076 ATGAAATCAAACGGATTGGT 33095 |||||||| || || || || Sbjct 42251 ATGAAATCGAATGGGTTTGT 42270 >seq5746 Length=27722 Score = 174 bits (192), Expect = 2e-38 Identities = 378/566 (67%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 63117 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 63176 |||||| ||| ||||| ||| || || || |||||| || | | || ||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280 Query 63177 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63236 || | ||| ||||| | ||||| ||| ||| | ||| ||| ||| || | ||| Sbjct 14281 TCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCA 14340 Query 63237 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63296 |||||||| ||||| || ||||| | | ||| |||||| || || ||||| Sbjct 14341 GGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTA 14400 Query 63297 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63356 || || | ||| || || || | ||||| ||||||| ||| || || | | Sbjct 14401 CGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCA 14460 Query 63357 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63416 || ||||| |||||||| |||||||| | ||| | || ||||| |||||||| | || | Sbjct 14461 CCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGC 14520 Query 63417 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGA 63476 ||||||| | ||| || ||| ||||| || || | ||| | | || || || Sbjct 14521 ATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACCCTTGCTTCGT 14580 Query 63477 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63536 || || |||||| || || || || |||| || || | || || | || Sbjct 14581 ATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTTC 14640 Query 63537 AACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGAC 63596 || |||||||| || ||||| ||||| ||||| |||| | || || |||| || ||| Sbjct 14641 AAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGAC 14700 Query 63597 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63656 ||||| | || || || || ||||||| ||| || || || || |||||||| ||| Sbjct 14701 ATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTTT 14760 Query 63657 TCAGAAAGTAGATTGTACGTCTCAAT 63682 | || | || | ||| |||| ||| Sbjct 14761 CCGGACATGAGTTCGTAAGTCTAAAT 14786 >seq28812 Length=1987 Score = 127 bits (140), Expect = 3e-24 Identities = 132/172 (77%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || |||| ||| | ||||| | ||| |||||| ||||| ||||| ||||| || || Sbjct 928 TCATTAATATACATGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCA 987 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||| || || ||||| || | || |||| ||||||||||||| ||| || |||||| Sbjct 988 ATCTGGAAGCCATAGAAGCAACGGGCTTCGG-AATCTGTACTTCTTTACTGAAGCGTTCC 1046 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 33736 | | ||||||||| |||||||||||| | || |||||||| || | |||| Sbjct 1047 ACAAGATTTTCATTGACTATTCCGTCATTTGCGGCAAAAAATGCGAGGACAT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622505078798480