Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq7809 109 5e-19 seq4071 95.1 1e-14 seq3705 84.2 2e-11 >seq7809 Length=21078 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||||| ||||| ||| |||| || | ||| | ||| | | | Sbjct 13152 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC 13211 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | |||||| || || |||||||| || || || || || ||| Sbjct 13212 GACTCGATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13271 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || |||| |||| | ||||||||||||||||||| | | | | |||||| || Sbjct 13272 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAAT 13331 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||||||| || || || ||||||| ||| || Sbjct 13332 ATTCAAAAGGAGTCGACCCTCCATCTTGTCTTG 13364 >seq4071 Length=35431 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || || || || || ||||||||||| || | || ||| ||||||||||| Sbjct 35399 GACAAAGAGGGCATCCCACCAGACCAACAAAGACTGATCTTCGCCGGTAAACAACTCGAG 35340 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | | | | | |||||| ||||||||||| || || || | ||||||||| || Sbjct 35339 GATGGTCGCACCCTTTCCGACTACAACATTCAAAAGGAGTCGACCCTGCATCTGGTCTTG 35280 Query 26982 AGACT 26986 |||| Sbjct 35279 CGACT 35275 >seq3705 Length=37567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 || || ||||||||||| || ||||| ||| | | | || || ||||| ||||| | | Sbjct 13015 GACGACCTATGGAATGCAGCGCAGCGCCAGTTGCTGACAGAAGGCAAAATCCACGGCTTC 12956 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGG 71773 || |||||||||||||| |||||||| ||||| ||| Sbjct 12955 CTGCGCATGTACTGGGCTAAAAAGATACTCGAATGG 12920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478322681328160