Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5746 122 2e-22 >seq5746 Length=27722 Score = 122 bits (134), Expect = 2e-22 Identities = 367/563 (65%), Gaps = 14/563 (2%) Strand=Plus/Minus Query 363574 AATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGAT 363633 || ||||| || | | || || ||||| ||| | || || | |||||||| || Sbjct 14726 AACGCTGGGACCCCTCTGCCTCAAATGTCCAGTTGTTACCTCCTCACTATGAAGGATGAC 14667 Query 363634 TCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGC 363693 ||| ||||| || | |||||| | ||| | ||||| ||||| || || ||||| || Sbjct 14666 AGCATTGAGGGCATTTATGACACTTTGAAGCAGTGTGCGCTTATATCAAAAAATGCTGGT 14607 Query 363694 GGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTC---GCGGCACA 363750 || || ||| || | ||| | | | | || | | ||| || |||| | Sbjct 14606 GGCATCGGTCTAAACGTTCAC----TGCATACGAAGCAAGGGTACTTTTATAGCGGGAAC 14551 Query 363751 GGG-GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTA 363809 | ||| | || ||||| ||||||| ||||| || || | | |||| || || |||| Sbjct 14550 GAATGGAGAATCCAATGGTTTGGTTCCAATGCTGCGCGTTTATAACAACACAGCCCGGTA 14491 Query 363810 CGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCA 363869 ||| || ||||||||| ||||| || || ||||| || || || || || || Sbjct 14490 CGTTGATCAGGGTGGAAACAAGCGGCCCGGTGCCTTTGCAATTTACCTGGAACCATGGCA 14431 Query 363870 TGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGC 363929 | || || | ||||| | |||||||| || ||||| || |||||| | || Sbjct 14430 CCCAGACATCCTGCAGTTTGTGGAGCTCCGTAAGAACACTGGCGCTGAGGAAACCAGAGC 14371 Query 363930 ACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGG 363989 |||||||| ||| | || || ||| || ||||| || ||| |||||| | || Sbjct 14370 TCGTGATCTCTTCCAGGCTCTCTGGATTCCTGACTTATTCATGCGACGCGTGCA---AGA 14314 Query 363990 TAAGAAT---TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGG 364046 ||| || ||| |||| | || ||||| ||||||||||| | |||| ||||| Sbjct 14313 TAACGATAAGTGGACACTGATGGATCCTCACGAGTGTCCAGGTCTATTCGATTGTTGGGG 14254 Query 364047 TGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAAT 364106 || || | || | ||| ||| || || ||||| ||||| | ||| ||||| | Sbjct 14253 CGAAGAATTTGAAAAGTTGTACACAAAATACGAGTCGGAAGGAAAAGGTCGCAAGACTCT 14194 Query 364107 TCCCGCACAGAAGCTATGGTTTG 364129 || || ||| | | |||| || Sbjct 14193 TCAGGCCCAGGAAGTGTGGTATG 14171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302405451800396