Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7809 107 2e-18 seq4071 100 2e-16 >seq7809 Length=21078 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| ||||| ||| ||||||| | ||||| || | | | Sbjct 13152 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC 13211 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | |||||| || || |||||||| || || || || || ||| Sbjct 13212 GACTCGATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13271 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||||| | ||||| ||||||||||||| | | | | | ||| || || Sbjct 13272 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAAT 13331 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || || || Sbjct 13332 ATTCAAAAGGAGTCGAC 13348 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || ||| | ||||| | || || ||| ||| | Sbjct 13380 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13439 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | || || || || |||||||| || || || || || ||| Sbjct 13440 GACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13499 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||||| | ||||| ||||||||||||| | | | | | ||| || || Sbjct 13500 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAAT 13559 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || || || Sbjct 13560 ATTCAAAAGGAGTCGAC 13576 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || ||| | ||||| | || || ||| ||| | Sbjct 13608 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13667 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | || || || || |||||||| || || || || || ||| Sbjct 13668 GACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13727 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||||| | ||||| ||||||||||||| | | | | | ||| || || Sbjct 13728 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAAT 13787 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || || || Sbjct 13788 ATTCAAAAGGAGTCGAC 13804 >seq4071 Length=35431 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | || || || | ||||| | || ||||| ||| Sbjct 35264 ATGCAGATTTTTGTCAAGACACTGACCGGTAAGACTATTACGTTGGAGGTCGAACCCAGT 35205 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | ||||| ||||| |||||||| ||||| || || || ||| Sbjct 35204 GACTCGATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAA 35145 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | || |||||||||||||| |||| | | | | | ||| || || Sbjct 35144 CAGAGACTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAT 35085 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| ||||| || || | ||| | ||| Sbjct 35084 ATTCAGAAAGAGTCGACCCTGCATCTGGTG 35055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429638492080590