Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7809 116 3e-21 seq4071 116 3e-21 seq5746 95.1 1e-14 >seq7809 Length=21078 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||| || | ||| | |||||||||||||||||| ||||| ||| Sbjct 13607 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13548 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || || || ||||| || | || | ||||| |||||||| || Sbjct 13547 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13488 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| |||||||| |||||| ||| | | ||| | | ||| ||| ||| | Sbjct 13487 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13428 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||||| || || | || || ||||||||||||||| Sbjct 13427 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13379 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||| || | ||| | |||||||||||||||||| ||||| ||| Sbjct 13835 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13776 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || || || ||||| || | || | ||||| |||||||| || Sbjct 13775 AAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13716 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| |||||||| |||||| ||| | | ||| | | ||| ||| ||| | Sbjct 13715 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13656 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||||| || || | || || ||||||||||||||| Sbjct 13655 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13607 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||| || | ||| | |||||||||||||||||| ||||| ||| Sbjct 13379 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13320 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || || || ||||| || | || | ||||| |||||||| || Sbjct 13319 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13260 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| |||||||| |||||| |||| | ||| | | ||| | | || | Sbjct 13259 GATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAAC 13200 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237 || | |||| ||||| || || | || || || || ||||||||||| Sbjct 13199 TTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATGAC 13149 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||||| ||| | || ||||| || |||||||||||||| | ||||| Sbjct 14050 CGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCA 13991 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| || || || || ||| |||||| | || || || || ||||||||||| ||| Sbjct 13990 TCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTG 13931 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||| ||| | | ||| | | ||| ||| ||| | || | |||| Sbjct 13930 TCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATT 13871 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || || | || || ||||||||||||||| Sbjct 13870 GTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13835 >seq4071 Length=35431 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| | ||| | ||||||||| || ||||| ||||| ||| Sbjct 35038 CCGCCACGAAGACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAA 35097 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || |||||||| ||| |||| | | ||| ||||| || ||| Sbjct 35098 AGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGG 35157 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || ||||| | ||| | | || ||| |||| Sbjct 35158 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACC 35217 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || |||||||| || || || || ||||||||||| Sbjct 35218 TCCAACGTAATAGTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| || | ||| | |||||||||||||||||||||||| ||| Sbjct 35266 CCACCACGGAGTCGCAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 35325 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || || || || ||| |||| | | || ||||| || ||| Sbjct 35326 AGGGTGCGACCATCCTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGG 35385 Query 131128 ATTCCTTCTTTGTC 131141 || || |||||||| Sbjct 35386 ATGCCCTCTTTGTC 35399 >seq5746 Length=27722 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 145628 ATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGC 145686 || ||||| | ||||||||| || |||| || |||| ||||||| || ||||| | Sbjct 13927 ATGGACGCGAGATTACAAACGGCAATCTCATCAGGCGAA-CTGTATTCAACTATCTCTGT 13985 Query 145687 GCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGC 145746 ||| | || ||||| || |||||||||| ||| |||||| || | |||||||| Sbjct 13986 GCAGAGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGATTAGACTTGCGATTGCACGC 14045 Query 145747 GTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 ||||||||| |||||| | || ||||||||| | |||| Sbjct 14046 GTCCTTGTACAGCATGAAAGGATTGCCAGTCTCGATTTGCG 14086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471677800715520