Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09-
25] 56,778 sequences; 539,424,504 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq2105 84.2 3e-11
>seq2105
Length=50492
Score = 84.2 bits (92), Expect = 3e-11
Identities = 168/247 (68%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 15407 GGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCG 15466
|| ||||| |||||||| || || || ||||||||| | |||||||| ||| || |
Sbjct 30518 GGCCCGACCTACTATCAACGCCTGAAGCACATGGTAGATGACAAGATTCACAGCAGAGCT 30459
Query 15467 CACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGA--TCGCAAGGCGGTG 15524
| || | || || ||| |||||||||||| ||||| |||| | | |||
Sbjct 30458 CGTGGCCCCGTACAGATTCTCAATCGCCAGCCCATGGAGGGTCGCAGTCGCGATG--GTG 30401
Query 15525 GCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCC 15584
||||||| || || |||||||| |||||| | | ||||| || | || || |
Sbjct 30400 GCCTCCGGTTCGGTGAGATGGAGCGTGACTGCCAGATTGCCCACGGTGCAGCGCAGTTTC 30341
Query 15585 TCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGCAAAGACTGCG 15644
| ||||||| | || || |||||| || | |||| | |||| ||||| ||||
Sbjct 30340 TGCGCGAGCGCCTCTTCTTCGCCAGTGATCCTTACCAGGTGTACGTATGCAATCTATGCG 30281
Query 15645 GCATGAT 15651
|| ||||
Sbjct 30280 GCTTGAT 30274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610958079812800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |