Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq2105 84.2 3e-11 >seq2105 Length=50492 Score = 84.2 bits (92), Expect = 3e-11 Identities = 168/247 (68%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 15407 GGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCG 15466 || ||||| |||||||| || || || ||||||||| | |||||||| ||| || | Sbjct 30518 GGCCCGACCTACTATCAACGCCTGAAGCACATGGTAGATGACAAGATTCACAGCAGAGCT 30459 Query 15467 CACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGA--TCGCAAGGCGGTG 15524 | || | || || ||| |||||||||||| ||||| |||| | | ||| Sbjct 30458 CGTGGCCCCGTACAGATTCTCAATCGCCAGCCCATGGAGGGTCGCAGTCGCGATG--GTG 30401 Query 15525 GCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCC 15584 ||||||| || || |||||||| |||||| | | ||||| || | || || | Sbjct 30400 GCCTCCGGTTCGGTGAGATGGAGCGTGACTGCCAGATTGCCCACGGTGCAGCGCAGTTTC 30341 Query 15585 TCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGCAAAGACTGCG 15644 | ||||||| | || || |||||| || | |||| | |||| ||||| |||| Sbjct 30340 TGCGCGAGCGCCTCTTCTTCGCCAGTGATCCTTACCAGGTGTACGTATGCAATCTATGCG 30281 Query 15645 GCATGAT 15651 || |||| Sbjct 30280 GCTTGAT 30274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610958079812800