Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2636 208 1e-48 seq5746 192 7e-44 seq28812 118 1e-21 >seq2636 Length=44840 Score = 208 bits (230), Expect = 1e-48 Identities = 415/618 (67%), Gaps = 34/618 (6%) Strand=Plus/Plus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 ||||| |||| | ||| || || || ||| || || || || | || |||| ||| Sbjct 42529 TGTTTGAACAAAAGACAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCA 42588 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 ||| || || | ||| ||||| || |||||||| || | ||| || || |||||||| Sbjct 42589 TTGCTGAATGTCAATCCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAAC 42648 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 32825 || || |||||||||| || ||||| || |||||||||| || | |||| | || | Sbjct 42649 GACCCGGAAAAGAAAACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG 42708 Query 32826 GCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG---- 32878 | | |||| ||||| || | |||||||| |||||||| || |||||||| Sbjct 42709 GACTTCGAGTCACCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGG 42768 Query 32879 ----------CATTG---------TCTCTATA---GCATTAA-----AGAGATAGttttt 32911 ||||| || ||| | | | ||| ||||| | | Sbjct 42769 GTTTGTACCGCATTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCG 42828 Query 32912 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971 ||| | || |||| ||| ||||| || | ||| |||||||||||| ||||| || Sbjct 42829 TTCGATTGGGTCCTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATT 42888 Query 32972 TTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACA 33031 ||| || || || || || || |||||||| | || || | ||||||||||||| || Sbjct 42889 TTCGATTGCAATCTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACT 42948 Query 33032 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33091 || |||||| | | ||||||||| ||||||||||| || || |||||||| || | || Sbjct 42949 GAAGCGTTCTACAAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGAC 43008 Query 33092 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 33151 || | || || | || ||| | |||| | ||| ||| | || || | Sbjct 43009 ATATGAAATGAAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCGC 43068 Query 33152 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | || ||||| || || ||||||||||| ||| | ||||| || || | | |||||| Sbjct 43069 CAAGTCAACTTCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGAT 43128 Query 33212 GTCATGATATTGAATTGG 33229 ||||||||| || || || Sbjct 43129 GTCATGATACTGGATGGG 43146 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432 ||||||||||| || ||||| || || || ||||| || ||||| | ||||| |||||| Sbjct 42191 TGGTATTCACCAACGCGTTTCTCAAAGAAGTTAGTCTTTCCTTCCAGAGATATGTTTTCC 42250 Query 32433 ATGAAATCGAATGGATTGGT 32452 |||||||||||||| || || Sbjct 42251 ATGAAATCGAATGGGTTTGT 42270 >seq5746 Length=27722 Score = 192 bits (212), Expect = 7e-44 Identities = 382/566 (67%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 62972 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACAT 63031 |||||| ||| ||||| ||| || || || |||||| || | || || ||||| Sbjct 14221 TCGTATTTTGTGTACAACTTTTCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACAC 14280 Query 63032 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63091 || | ||| ||||| | ||||| ||| ||| | ||| ||| ||| || | ||| Sbjct 14281 TCGTGAGGATCCATCAGTGTCCACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCA 14340 Query 63092 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63151 |||||||| ||||| || ||||| | | ||| |||||| || || ||||| Sbjct 14341 GGAATCCAGAGAGCCTGGAAGAGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTTCTTA 14400 Query 63152 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63211 || || | ||| || || || | ||||| ||||||| ||| || || | | Sbjct 14401 CGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCA 14460 Query 63212 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63271 || ||||| |||||||| |||||||| | ||| | || ||||| |||||||| | || | Sbjct 14461 CCGGGCCGCTTGTTTCCACCCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGC 14520 Query 63272 ATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGA 63331 ||||||| | |||||||||| ||||| || || | ||| | | || || || Sbjct 14521 ATTGGAACCAAACCATTGGATTCTCCATTCGTTCCCGCTATAAAAGTACCCTTGCTTCGT 14580 Query 63332 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63391 || || |||||| || || || || |||| || || | || || | || Sbjct 14581 ATGCAGTGAACGTTTAGACCGATGCCACCAGCATTTTTTGATATAAGCGCACACTGCTTC 14640 Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 63451 || || ||||| |||||||| || || |||||| |||| | || || |||| || ||| Sbjct 14641 AAAGTGTCATAAATGCCCTCAATGCTGTCATCCTTCATAGTGAGGAGGTAACAACTGGAC 14700 Query 63452 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTT 63511 ||||| | || || || || ||||||| ||| || || || ||||||||||| ||| Sbjct 14701 ATTTGAGGCAGAGGGGTCCCAGCGTTAAATAGGGTGGGCGATGCATGAGTAAACCACTTT 14760 Query 63512 TCAGAAAGTAGATTGTACGTCTCAAT 63537 | || | || | ||| |||| ||| Sbjct 14761 CCGGACATGAGTTCGTAAGTCTAAAT 14786 >seq28812 Length=1987 Score = 118 bits (130), Expect = 1e-21 Identities = 130/172 (76%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || |||| ||| | || || | ||| |||||| ||||| ||||| ||||| || || Sbjct 928 TCATTAATATACATGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCA 987 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || || || || |||||||| | || |||| ||||||||||||| ||| || ||||| Sbjct 988 ATCTGGAAGCCATAGAAGCAACGGGCTTCGG-AATCTGTACTTCTTTACTGAAGCGTTCC 1046 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 33093 | | ||||||||| |||||||||||| | || |||||||| || | |||| Sbjct 1047 ACAAGATTTTCATTGACTATTCCGTCATTTGCGGCAAAAAATGCGAGGACAT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633182295528800