Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq15210 113 4e-20 seq7809 111 1e-19 seq4071 95.1 1e-14 >seq15210 Length=8810 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || || || | || || |||| || ||| | || Sbjct 1329 ATGCAGATATTTGTCAAGACCCTCACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCG 1388 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | |||||| | ||| | || | ||| || ||||| || || || || ||||| Sbjct 1389 GACTCCATCGAGAATGTAAAGGCCAAGATTCAA-GATAAAGAGGGTATCCCTCCAGACCA 1447 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||||| |||| || || |||||||| | ||||||| || ||| || ||||| || Sbjct 1448 ACAGCGGCTTATATTCGCTGGCAAACAGCTCGAAGATGGACGTACTCTGTCGGATTATAA 1507 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| || ||||| ||||| Sbjct 1508 TATTCAAAAGGAGTCCACTCTACA 1531 >seq7809 Length=21078 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || ||| | || || | || || ||| | Sbjct 13380 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13439 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| |||||| |||||||| || || || || |||||| Sbjct 13440 GACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13499 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||| ||||||||| | ||||||| ||||| | ||| |||||| Sbjct 13500 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAAT 13559 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 |||||||| || || || || ||| Sbjct 13560 ATTCAAAAGGAGTCGACCCTCCAT 13583 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || ||| | || || | ||||| || | Sbjct 13152 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC 13211 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| | || ||| | || |||| |||| || |||||||| || || || || ||| Sbjct 13212 GACTCGATTGAG--AATGTCAAAGCTAAAATCCAG-GACAAAGAGGGAATCCCGCCGGAC 13268 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | |||||||| ||||||||| | ||||||| ||||| | ||| ||| Sbjct 13269 CAACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTAC 13328 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||| || || || || ||| Sbjct 13329 AATATTCAAAAGGAGTCGACCCTCCAT 13355 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || ||| | || || | || || ||| | Sbjct 13608 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13667 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| |||||| |||||||| || || || || |||||| Sbjct 13668 GACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13727 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||| ||||||||| | ||||||| || || | ||| |||||| Sbjct 13728 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAAT 13787 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 |||||||| || || || || ||| Sbjct 13788 ATTCAAAAGGAGTCGACCCTCCAT 13811 >seq4071 Length=35431 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||||| | || || | || || || | | Sbjct 35264 ATGCAGATTTTTGTCAAGACACTGACCGGTAAGACTATTACGTTGGAGGTCGAACCCAGT 35205 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| | ||| || ||| |||||||| || || ||||| |||||| Sbjct 35204 GACTCGATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAA 35145 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || || ||||| ||| | || |||| ||||| | ||| |||||| Sbjct 35144 CAGAGACTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAT 35085 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || ||| | ||||| Sbjct 35084 ATTCAGAAAGAGTCGACCCTGCATCTGGTGCT 35053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433028144878070