Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09-
25] 56,778 sequences; 539,424,504 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq15210 113 4e-20
seq7809 111 1e-19
seq4071 95.1 1e-14
>seq15210
Length=8810
Score = 113 bits (124), Expect = 4e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| ||||| | || || || | || || |||| || ||| | ||
Sbjct 1329 ATGCAGATATTTGTCAAGACCCTCACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCG 1388
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| | |||||| | ||| | || | ||| || ||||| || || || || |||||
Sbjct 1389 GACTCCATCGAGAATGTAAAGGCCAAGATTCAA-GATAAAGAGGGTATCCCTCCAGACCA 1447
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||||| |||| || || |||||||| | ||||||| || ||| || ||||| ||
Sbjct 1448 ACAGCGGCTTATATTCGCTGGCAAACAGCTCGAAGATGGACGTACTCTGTCGGATTATAA 1507
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||||||||| || ||||| |||||
Sbjct 1508 TATTCAAAAGGAGTCCACTCTACA 1531
>seq7809
Length=21078
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| || ||| | || || | || || ||| |
Sbjct 13380 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13439
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| | || ||| ||||| |||||| |||||||| || || || || ||||||
Sbjct 13440 GACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13499
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | |||||||| ||||||||| | ||||||| ||||| | ||| ||||||
Sbjct 13500 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTACAAT 13559
Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202
|||||||| || || || || |||
Sbjct 13560 ATTCAAAAGGAGTCGACCCTCCAT 13583
Score = 109 bits (120), Expect = 5e-19
Identities = 150/207 (72%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| || ||| | || || | ||||| || |
Sbjct 13152 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACGATTACTTTGGAAGTTGAACCTAGC 13211
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||| | || ||| | || |||| |||| || |||||||| || || || || |||
Sbjct 13212 GACTCGATTGAG--AATGTCAAAGCTAAAATCCAG-GACAAAGAGGGAATCCCGCCGGAC 13268
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | |||||||| ||||||||| | ||||||| ||||| | ||| |||
Sbjct 13269 CAACAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTTTCCGACTAC 13328
Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202
||||||||||| || || || || |||
Sbjct 13329 AATATTCAAAAGGAGTCGACCCTCCAT 13355
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| || ||| | || || | || || ||| |
Sbjct 13608 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTGGAGGTTGAGCCCAGC 13667
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| | || ||| ||||| |||||| |||||||| || || || || ||||||
Sbjct 13668 GACTCGATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCGCCGGACCAA 13727
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | |||||||| ||||||||| | ||||||| || || | ||| ||||||
Sbjct 13728 CAGCGACTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGACTACAAT 13787
Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202
|||||||| || || || || |||
Sbjct 13788 ATTCAAAAGGAGTCGACCCTCCAT 13811
>seq4071
Length=35431
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||||||||| | || || | || || || | |
Sbjct 35264 ATGCAGATTTTTGTCAAGACACTGACCGGTAAGACTATTACGTTGGAGGTCGAACCCAGT 35205
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| | || ||| | ||| || ||| |||||||| || || ||||| ||||||
Sbjct 35204 GACTCGATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAA 35145
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| | | || || || ||||| ||| | || |||| ||||| | ||| ||||||
Sbjct 35144 CAGAGACTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAT 35085
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| ||||| || || || ||| | |||||
Sbjct 35084 ATTCAGAAAGAGTCGACCCTGCATCTGGTGCT 35053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433028144878070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |