Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2636 181 1e-40 seq28812 98.7 1e-15 >seq2636 Length=44840 Score = 181 bits (200), Expect = 1e-40 Identities = 419/632 (66%), Gaps = 41/632 (6%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || |||||||| || || | ||||| || || ||| | |||||||||||||| || Sbjct 42544 CAAGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTGCTGAATGTCAAT 42603 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || ||||| | ||| || || || ||||| || ||||| || Sbjct 42604 CCCGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGACCCGGAAAAGAAA 42663 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--- 93268 | || || ||||| ||||| || || | ||| || | |||| | ||| || | Sbjct 42664 ACCCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGT---GGACTTCGAGTCA 42720 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 | |||||||| | |||||||| || || ||||| | ||||||||| |||| | || Sbjct 42721 CCAATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTTTGTACCGCA 42780 Query 93329 TTAAATAGGTAATCTC----------------GCT-----------CGTCCGAATC--TC 93359 || || ||| | || | || ||| ||| | || Sbjct 42781 TTGAACAGGAAGTCACTAAAAACGAAATAAGAGCCAGAGAAATTACCGTTCGATTGGGTC 42840 Query 93360 GT--ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAAT 93417 | || || |||||||| | |||||||||||||| || || | ||| || |||||||| Sbjct 42841 CTTAATATACGTATCGATGAGGAGAGAATACATTTCCGAGTGAATATTTTCGATTGCAAT 42900 Query 93418 TTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 ||||| || ||||| || | ||||||| ||||| ||||||||| || | ||||| Sbjct 42901 CTGGAAGCCATAGAAGCAACGGGCTTCCGGAATCTGTACTTCTTGACTGAAGCGTTCTAC 42960 Query 93478 GAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA--ATATATGCTTTATA 93535 ||||||||||| ||||| || ||| || |||||||| || | | ||||| || Sbjct 42961 AAGATTTTCATTAACTATTCCGTCGCTCGCGGCAAAAAATGCGAGGACATATG--AAATG 43018 Query 93536 AAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACT 93595 || || ||||| | || || || ||||| || || || || | | || ||| Sbjct 43019 AAGTGCTTCTCGCCGTCCTTTAGGGATTCCCAGTCACCTAAGTCCTTCGCCAAGTCAACT 43078 Query 93596 TCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATAT 93655 || || || |||||||| || || | || || ||||| | | ||| ||||| ||||| Sbjct 43079 TCCTCAACGGTCCAAAATGAAGCCACCGCCTTCTTGTAAAACTGCCAGATGTCATGATAC 43138 Query 93656 TGAATTGGAAATATGACAAAACGATTAGGGTT 93687 || || || | || || || || | ||||| Sbjct 43139 TGGATGGGCATGATCACGAACCGCCTCGGGTT 43170 >seq28812 Length=1987 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 93371 TCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAG 93430 ||||| | ||||||||||| || || || | ||| || |||||||| ||||| || ||| Sbjct 943 TCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCAATCTGGAAGCCATAG 1002 Query 93431 AAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTG 93490 || || | |||| || ||||| ||||||| | || | || || |||||||||||| Sbjct 1003 AAGCAACGGGCTT-CGGAATCTGTACTTCTTTACTGAAGCGTTCCACAAGATTTTCATTG 1061 Query 93491 ACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||||| || || ||| |||||||| || Sbjct 1062 ACTATTCCGTCATTTGCGGCAAAAAATGC 1090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556465581968720