Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7809 116 3e-21 seq4071 107 2e-18 seq5746 82.4 6e-11 >seq7809 Length=21078 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || ||||| | ||||| || || || ||| | Sbjct 13836 ATGCAGATTTTCGTCAAGACGTTGACAGGCAAAACAATTACTCTAGAGGTTGAGCCCAGC 13895 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || ||||| || |||||||| || || || || |||||| Sbjct 13896 GACTCGATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGATCAA 13955 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| ||||| | |||||| |||||| |||| ||||||||| Sbjct 13956 CAAAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAAC 14015 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| ||||| || || | ||| |||| Sbjct 14016 ATTCAGAAAGAGTCTACACTGCATCTAGT 14044 >seq4071 Length=35431 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||| ||||| || ||||| || |||||| | || || || ||||| ||| Sbjct 35408 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAACAAAGACTGATCTTCGCCGGTAAA 35349 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| |||||| | ||||| |||||||||||||| || || ||| | ||| Sbjct 35348 CAACTCGAGGATGGTCGCACCCTTTCCGACTACAACATTCAAAAGGAGTCGACCCTGCAT 35289 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||||| | || || ||| Sbjct 35288 CTGGTCTTGCGACTCCGTGGTGGT 35265 >seq5746 Length=27722 Score = 82.4 bits (90), Expect = 6e-11 Identities = 186/274 (68%), Gaps = 7/274 (3%) Strand=Plus/Plus Query 130120 ATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCT 130176 ||||| | |||||| ||||| | |||||||| | || || ||| ||| || || Sbjct 14422 ATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCACCGGGCCGCTTGTTTCCACCC 14481 Query 130177 TGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCC 130236 || ||||||| || | | ||||| || || |||| ||||| |||| || |||| Sbjct 14482 TGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGCATTGGAACCAAACCATTGGAT 14541 Query 130237 GTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCC-CGAACGTTATGAACGCTTAGACC 130295 || || || | | | || ||| | || | || || | | |||||| ||||||| Sbjct 14542 TCTCCATTCGTTCCCGCTATAAAAGTACC-CTTGCTTCGTATGCAGTGAACGTTTAGACC 14600 Query 130296 TATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAA 130354 ||||| || || ||||||||| | ||| || | || | | || ||||||||||| Sbjct 14601 GATGCCACCAGCATTTTTTGATATAAGCGCACACT-GCTTCAAAGTGTCATAAATGCCCT 14659 Query 130355 CGATACTGTCTTCTTTAATGTTTAGGAGGAAACA 130388 | || ||||| || || || | |||||| |||| Sbjct 14660 CAATGCTGTCATCCTTCATAGTGAGGAGGTAACA 14693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419437555831570