Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2636 114 2e-20 seq5746 104 4e-17 >seq2636 Length=44840 Score = 114 bits (126), Expect = 2e-20 Identities = 280/421 (67%), Gaps = 5/421 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || | | || | || || | ||||||||||| || ||||| || || Sbjct 42788 CTGTTCAATGCGGTACAAACCCTACCTTGTGTGAAGAAGAAGGCTGATTGGGCACTTAAA 42729 Query 42669 TGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||| | | | | ||| | | || || ||| | || || |||||| | ||||| || Sbjct 42728 TGGATTG-GTGACTCGAAGTCCACTTTTCCAGAGCGTCTAGTTGCCTTTGCTGCCGTAGA 42670 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGAT 42787 ||| | ||||| || || | || || || ||||||||| | ||| || | | || Sbjct 42669 GGGGGTTTTCTTTTCCGGGTCGTTTGCGTCTATCTTCTGGTTGAAGAAGCGTGGGCTTAT 42610 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| ||| | || ||| || ||||| || ||| | || || ||||| || | ||||| Sbjct 42609 GCCGGGATTGACATTCAGCAATGAACTAATAAGCCGTGATGAAGGGCTTCACACTGACTT 42550 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 ||| || || ||||| | ||| |||| ||||||| || |||||||| || Sbjct 42549 TGCTTGTCTTTTGTTC---AAACACATCAGAAACAAGCCGTCTAAGGAGCGCGTTGAAAA 42493 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 || || ||| || || || ||||| ||| || || || | | || || ||| Sbjct 42492 GATTATGCGGGAAGCTGTTGACATCGAAGTGGAATTTCTTACTGACGCTCTTCCTGTGGA 42433 Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 |||| | ||||||||| || ||| | ||||||| | | ||| ||||| | ||| Sbjct 42432 CCTGATTGGCATGAACTGTCGTCTTATGGCCCAGTACATTCGTTTCGTTGCCGATCGTCT 42373 Query 43028 C 43028 | Sbjct 42372 C 42372 >seq5746 Length=27722 Score = 104 bits (114), Expect = 4e-17 Identities = 123/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 245010 GCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTG--CTCGTC 245067 ||||||| | ||| || |||||||| ||||||||||| || | | ||||| || || Sbjct 14327 GCATGAATAAGTCAGGAATCCAGAGAGCCTGGAAGAGATCAC--GAGCTCTGGTTTCCTC 14384 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | |||||||||||| | ||||||| ||| | | || ||| |||||| || |||| Sbjct 14385 AGCGCCAGTGTTCTTACGGAGCTCCACAAACTGCAGGATGTCTGGGTGCCATGGTTCCAG 14444 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 ||| | || | ||| |||||||||||||| || ||||| || || Sbjct 14445 GTAAATTGCAAAGGCACCGGGCCGCTTGTTTCCACCCTGATCAAC 14489 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||| | || ||||| ||||||||||| ||| || || || ||||| || ||||||| Sbjct 13967 TGTATTCAACTATCTCTGTGCAGAGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGAT 14026 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGA 244835 | |||||| ||||| ||||||||||| |||||||| || || ||||||| Sbjct 14027 TAGACTTGCGATTGCACGCGTCCTTGTACAGCATGAAAGGATTGCCAGTCTCGA 14080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943668978861280