Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7809 140 8e-28 seq4071 132 1e-25 seq15210 123 6e-23 >seq7809 Length=21078 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | | || ||||| | || || ||||| ||||| |||| Sbjct 13382 CATG-CCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGT 13324 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| | |||||| || || || ||||| |||||||| Sbjct 13323 CGGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCG 13264 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| ||||| ||||||||||| ||||| || || || || || ||||| | || Sbjct 13263 GCGGGATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTT 13204 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | || ||||| || || |||| ||||| || || |||||||| Sbjct 13203 CAACTTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | | || ||||| | || || ||||| ||||| |||| Sbjct 13610 CATG-CCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGT 13552 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| | |||||| || || || ||||| |||||||| Sbjct 13551 CGGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCG 13492 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| ||||| ||||||||||| || ||||| || || || || ||||| | | Sbjct 13491 GCGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCT 13432 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || || || || || |||| ||||||||||| |||||||| Sbjct 13431 CAACCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | | || ||||| | || || ||||| ||||| |||| Sbjct 13838 CATG-CCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGT 13780 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || || ||||| | |||||| || || || ||||| |||||||| Sbjct 13779 CGGAAAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCG 13720 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| ||||| ||||||||||| || ||||| || || || || ||||| | | Sbjct 13719 GCGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCT 13660 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || || || || || |||| ||||||||||| |||||||| Sbjct 13659 CAACCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | ||||||||| || || || | |||||| || |||||| Sbjct 14026 TCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAG 13967 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | |||||| |||||| |||||||| || ||||||||||| || ||||| Sbjct 13966 ATTAGTCTTTGTTGA---TCTGGGGGGATTCCTTCCTTGTCCTGGATTTTGGCCTTCACA 13910 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || || ||||| | || || || || || || || || || |||| |||||| Sbjct 13909 TTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTGCCTGTCAACGTCTTG 13850 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 13849 ACGAAAATCTGCAT 13836 >seq4071 Length=35431 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| ||||||| || ||||| || || || | ||| || || |||||| Sbjct 35074 TCTTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAG 35133 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | |||||| |||||| || ||||| |||||||| || || || || || Sbjct 35134 ATCAGTCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTC 35193 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || | ||| || || | ||| || ||||| |||||||| |||||||| Sbjct 35194 TCAATCGAGTCACTGGGTTCGACCTCCAACGTAATAGTCTTACCGGTCAGTGTCTTGACA 35253 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 35254 AAAATCTGCAT 35264 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| | || ||||| | || || ||||| || || ||||||| Sbjct 35266 CCACCACGGAGTCGCAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 35325 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | |||||| || ||||||||||| | ||||| |||| Sbjct 35326 AGGGTGCGACCATCCTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGG 35385 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGA 288410 || || ||||| || ||||| || || ||||| || || || || Sbjct 35386 ATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTCTCGATTGA 35429 >seq15210 Length=8810 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| ||||| || || || || | ||| || ||||| |||||||| || | Sbjct 1555 CCGCCGCGAAGTCTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCCGAC 1496 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || ||||| ||||| | ||||| || ||||| || || |||||||| ||||| Sbjct 1495 AGAGTACGTCCATCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGG---TCTGGA 1439 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| || |||||||| || || || || || || || || || || || | || Sbjct 1438 GGGATACCCTCTTTATCTTGAATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCA 1379 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||| || || |||||||| ||||||||||| Sbjct 1378 ACCTCGAGGGTTATAGTCTTCCCTGTGAGGGTCTTGACAAATATCTGCAT 1329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178796239025484