Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2636 84.2 3e-11 >seq2636 Length=44840 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/236 (68%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || || || |||||| || |||||||| ||| || ||| Sbjct 42547 GCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTGCTGAATGTCAATCCC 42606 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || ||||||||||||||||| || | ||| || || || ||||| | Sbjct 42607 GGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGACCCGGAAAAGAAAACC 42666 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGT---CA 126223 ||||| || || || |||| |||||||| | ||| | | ||||| | || || Sbjct 42667 CCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAGTG---GACTTCGAGTCACCA 42723 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 | ||| || | ||||| | ||||| |||| | ||| || | ||| || | ||| Sbjct 42724 ATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTTTGTACCGC 42779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596929643216240