Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7809 109 5e-19 seq5746 86.0 6e-12 >seq7809 Length=21078 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||||||||||| | || || ||||| |||||||||||||| | Sbjct 14063 ACCGCCACGAAGGCGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGA 14004 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || || || || ||||| | || || | || || || || || Sbjct 14003 GAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGG 13944 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || || || ||||| ||| ||| ||| | | || | || || || Sbjct 13943 GATTCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13884 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | || ||||| ||||| || || |||||||| ||||| Sbjct 13883 CTCTAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13836 >seq5746 Length=27722 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 ||||| | || ||||||||||| || |||| |||||||| || || |||| ||| Sbjct 13930 GACGCGAGATTACAAACGGCAATCTCATCAGGCGAACTGTATTCAACTATCTCTGTGCAG 13989 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | || |||| ||| || ||||| | || ||||| || ||| ||||| ||||| Sbjct 13990 AGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGATTAGACTTGCGATTGCACGCGTCC 14049 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAAT 154753 ||||||| ||| | || |||| || || | ||| | ||||||||| Sbjct 14050 TTGTACAGCATGAAAGGATTGCCAGTCTCGATTTGCGCTTCAATAAT 14096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499290189594320