Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7809 111 2e-19 seq5746 104 2e-17 seq15210 89.7 5e-13 seq4071 89.7 5e-13 >seq7809 Length=21078 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || | ||| | | | |||||||||||||| ||||||||| Sbjct 13379 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13320 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || ||||||||||| || | | | || || |||||||||||||| || Sbjct 13319 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13260 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| |||||| ||| | | || | | |||| | | || || Sbjct 13259 GATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAAC 13200 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | |||||| ||||||| || || ||||| ||||||||| Sbjct 13199 TTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 13151 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || | ||| | | | |||||||||||||| ||||||||| Sbjct 13835 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13776 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| || ||||||||||| || | | | || || |||||||||||||| || Sbjct 13775 AAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13716 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| |||||| || | | || | | |||| | | ||| || Sbjct 13715 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13656 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||||| || |||| || || || |||||||||||| Sbjct 13655 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13607 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || | ||| | | | |||||||||||||| ||||||||| Sbjct 13607 GCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 13548 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || ||||||||||| || | | | || || |||||||||||||| || Sbjct 13547 AAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGG 13488 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| |||||| || | | || | | |||| | | ||| || Sbjct 13487 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAAC 13428 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||||| || |||| || || || |||||||||||| Sbjct 13427 CTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | || | |||| ||| | | ||||| || ||||||||||| || Sbjct 14062 CCGCCACGAAGGCGTAGCACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAG 14003 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||||||||||| ||||||| | ||||| || || || Sbjct 14002 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGG 13943 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | || | | |||| | | ||| ||| Sbjct 13942 ATTCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACC 13883 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| || |||| || || || |||||||||||| Sbjct 13882 TCTAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13835 >seq5746 Length=27722 Score = 104 bits (114), Expect = 2e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGG 153657 ||| ||||| |||||||| ||||| |||| || |||| ||||| | || ||||| | Sbjct 13926 AATGGACGCGAGATTACAAACGGCAATCTCATCAGGCGAA-CTGTATTCAACTATCTCTG 13984 Query 153658 CGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACG 153717 ||||||||| |||||| || |||| || ||| ||||| ||||||||||||| Sbjct 13985 TGCAGAGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGATTAGACTTGCGATTGCACG 14044 Query 153718 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 153763 |||| ||| | |||||| | || ||| ||||||| ||||| ||| Sbjct 14045 CGTCCTTGTACAGCATGAAAGGATTGCCAGTCTCGATTTGCGCTTC 14090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 193/286 (67%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 153843 TCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGAC 153902 ||||| || ||||| | || ||| || || ||||||| || ||| |||||| | | Sbjct 14242 TCAAATTCTTCGCCCCAACAATCGAATAGACCTGGACACTCGTGAGGATCCATCAGTGTC 14301 Query 153903 CACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATG 153962 ||| |||||| | | |||||||||||||| | || || | |||||| || | | | Sbjct 14302 CACTTATCGTTATCTTGCACGCGTCGCATGAATAAGTCAGGAATCCAGAGAGCCTGGAAG 14361 Query 153963 AGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGA-TTGAGCACGCTATA 154021 || || || || || ||||| ||||| |||| || | || | || || | Sbjct 14362 AGATCACGAGCTCTGGTTTCCTCAGCGCCAGTGTT--CTTACGGAGCTCCACAAACTGCA 14419 Query 154022 -GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGC 154077 |||||| | |||||| ||||| | ||| | || | |||||| ||| ||||| | Sbjct 14420 GGATGTCTGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCACCGGGCCGCTTGTTTCCAC 14479 Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 ||||||| |||| || | | ||||| | ||||||| ||| || Sbjct 14480 CCTGATCAACGTACCGGGCTGTGTTGTTATAAACGCGCAGCATTGG 14525 >seq15210 Length=8810 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| || || || || |||||| || ||||| ||||| || | Sbjct 1522 GACTCCTTTTGAATATTATAATCCGACAGAGTACGTCCATCTTCGAGCTGTTTGCCAGCG 1463 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || || ||||||||||| ||||| ||||| ||||| || ||| | || | |||| Sbjct 1462 AATATAAGCCGCTGTTGGTCTGGAGGGATACCCTCTTTATC-TTGAATCTTGGCCTTTAC 1404 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || ||| | | ||| ||||||| || | || || || || || || || Sbjct 1403 ATTCTCGATGGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTCCCTGTGAGGGTCTT 1344 Query 138600 TACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 1343 GACAAATATCTGCATG 1328 >seq4071 Length=35431 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || | ||| | | | ||||| || ||||| ||||||||| Sbjct 35038 CCGCCACGAAGACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAA 35097 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||| || || | |||| || | ||||||||| || || Sbjct 35098 AGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGGG 35157 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || || | | || | | ||| | | || ||| Sbjct 35158 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGACC 35217 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || ||||| ||||| || || |||||||||||||| Sbjct 35218 TCCAACGTAATAGTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || | ||| | | | |||||||||||||||||||||||| | || || Sbjct 35278 CGCAAGACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTGCGACCA 35337 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||||||||||||||||| |||| || | |||||||| || || || || |||||| Sbjct 35338 TCCTCGAGTTGTTTACCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATGCCCTCTTTG 35397 Query 138520 TC 138521 || Sbjct 35398 TC 35399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495910190168160