Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7809 102 6e-17 >seq7809 Length=21078 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || | ||| ||||| || || ||||| || ||||| ||| Sbjct 13380 TGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGG 13321 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | ||||| | |||||||||||| | |||| ||||||||||| | Sbjct 13320 AAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCG 13261 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| || ||||| ||||| ||| ||| | || || | |||||| ||| | Sbjct 13260 GGATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAA 13201 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| ||||| || |||| || || ||||| || ||||| Sbjct 13200 CTTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || | ||| ||||| || || ||||| || ||||| ||| Sbjct 13608 TGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGG 13549 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | ||||| | |||||||||||| | |||| ||||||||||| | Sbjct 13548 AAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCG 13489 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| || ||||| ||||| || ||| | || || | ||||| || | Sbjct 13488 GGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAA 13429 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||||| ||||| ||||||| || || || ||||| ||||| Sbjct 13428 CCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || | ||| ||||| || || ||||| || ||||| ||| Sbjct 13836 TGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGG 13777 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | ||||| | |||||||||||| | |||| ||||||||||| | Sbjct 13776 AAAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCG 13717 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| || ||||| ||||| || ||| | || || | ||||| || | Sbjct 13716 GGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAA 13657 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||||| ||||| ||||||| || || || ||||| ||||| Sbjct 13656 CCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||| ||| || ||||| ||||| || ||||||||||| ||| | | | || || Sbjct 14044 ACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTCG 13985 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| || ||| | || | | ||||| || || |||||||||||||| Sbjct 13984 AGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTGG 13925 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || ||| | || || | ||||| || || |||| ||||| ||||| Sbjct 13924 ATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTTG 13865 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| || || || ||||| ||||| Sbjct 13864 CCTGTCAACGTCTTGACGAAAATCTGCAT 13836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357144691213730