Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7809 109 5e-19 seq4071 109 5e-19 seq15210 96.9 3e-15 >seq7809 Length=21078 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | || ||||| |||||||||||||| ||| Sbjct 13378 CCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 13319 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || ||||| ||||| | |||| |||||| || || || || Sbjct 13318 AGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGG 13259 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| |||||| |||||| |||| | || | | ||| || || ||| Sbjct 13258 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCAACT 13199 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||||||||| |||| || || ||||| ||||||||| Sbjct 13198 TCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 13151 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | || ||||| |||||||||||||| ||| Sbjct 13606 CCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 13547 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || ||||| ||||| | |||| |||||| || || || || Sbjct 13546 AGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGG 13487 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| |||||| |||||| ||| | | || | | ||| | ||| || Sbjct 13486 ATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACC 13427 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | |||||||| |||| || || || |||||||||||| Sbjct 13426 TCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | || ||||| |||||||||||||| ||| Sbjct 13834 CCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 13775 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || ||||| ||||| | |||| |||||| || || || || Sbjct 13774 AGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGCGGG 13715 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| |||||| |||||| ||| | | || | | ||| | ||| || Sbjct 13714 ATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACC 13655 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | |||||||| |||| || || || |||||||||||| Sbjct 13654 TCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCATG 13607 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | ||||||||||| ||||| |||||||| | |||||| ||| || Sbjct 14045 CACTAGATGCAGTGTAGACTCTTTCTGAATGTTGTAATCAGAGAGCGTGCGGCCATCCTC 13986 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || ||||| || ||| |||| | || || ||||| || || || || ||||||||| Sbjct 13985 GAGTTGTTTACCGGCGAAGATTAGTCTTTGTTGATCTGGGGGGATTCCTTCCTTGTCCTG 13926 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| ||| | | || | | ||| | ||| || || | || | ||||| Sbjct 13925 GATTTTGGCCTTCACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATTGTTTT 13866 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| |||| || || || |||||||||||| Sbjct 13865 GCCTGTCAACGTCTTGACGAAAATCTGCATG 13835 >seq4071 Length=35431 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| ||||| ||| | || |||||||| ||||||||||| ||| Sbjct 35037 TCCGCCACGAAGACGCAGCACCAGATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGA 35096 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || || || || |||||| |||||| || ||| || || || || Sbjct 35097 AAGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGTGG 35156 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| |||||| ||| || ||||| | || | | ||| | ||||| Sbjct 35157 GATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATCGAGTCACTGGGTTCGAC 35216 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || |||||||| || || |||||||||||||| Sbjct 35217 CTCCAACGTAATAGTCTTACCGGTCAGTGTCTTGACAAAAATCTGCAT 35264 >seq15210 Length=8810 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||| | || | |||| |||| || ||||| ||||||||||| ||||| Sbjct 1558 GCACCGCCGCGAAGTCTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCC 1499 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || |||||||| |||||| | || | ||||| || || ||| Sbjct 1498 GACAGAGTACGTCCATCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGA 1439 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||| || || || || ||| | | |||| || ||||| | ||| Sbjct 1438 GGGATACCCTCTTTATCTTGAATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCA 1379 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | || || || || || || || ||||| ||||||||| Sbjct 1378 ACCTCGAGGGTTATAGTCTTCCCTGTGAGGGTCTTGACAAATATCTGCATG 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475163325194720