Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7809 109 5e-19 seq15210 84.2 2e-11 >seq7809 Length=21078 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||||| ||| || ||||| || || || |||||||| ||||| || ||| Sbjct 13381 ATGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCG 13322 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | |||||| || || | |||| ||| || ||||||||| Sbjct 13321 GAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGC 13262 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| || || ||||| ||||| || | | |||| || || Sbjct 13261 GGGATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATCGAGTCGCTAGGTTCA 13202 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||||||| || | || || ||||| || ||||| Sbjct 13201 ACTTCCAAAGTAATCGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 13152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||||| ||| || ||||| || || || |||||||| ||||| || ||| Sbjct 13609 ATGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCG 13550 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | |||||| || || | |||| ||| || ||||||||| Sbjct 13549 GAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGC 13490 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| || || ||||| || | || | | |||| | ||| Sbjct 13489 GGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCA 13430 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| |||||||| || | || || || ||||| ||||| Sbjct 13429 ACCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||||| ||| || ||||| || || || |||||||| ||||| || ||| Sbjct 13837 ATGCCACCACGGAGCCGCAAGACAAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCG 13778 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | |||||| || || | |||| ||| || ||||||||| Sbjct 13777 GAAAGGGTACGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCGCTGTTGGTCCGGC 13718 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| || || ||||| || | || | | |||| | ||| Sbjct 13717 GGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATCGAGTCGCTGGGCTCA 13658 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| |||||||| || | || || || ||||| ||||| Sbjct 13657 ACCTCCAGAGTAATTGTTTTGCCTGTCAACGTCTTGACGAAAATCTGCAT 13608 >seq15210 Length=8810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || || | || || || || || || |||||||| ||||||||||| | Sbjct 1555 CCGCCGCGAAGTCTGAGGACCAGGTGTAGAGTGGACTCCTTTTGAATATTATAATCC--G 1498 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| || | ||||| || ||| |||| | || || ||||| || | Sbjct 1497 ACAGAGTACGTCCATCTTCGAGCTGTTTGCCAGCGAATATAAGCCGCTGTTGGTCTGGAG 1438 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | || || |||||||||||||| || || | || | || ||| |||| ||| | Sbjct 1437 GGATACCCTCTTTATCTTGAATCTTGGCCTTTACATTCTCGATGGAGTCCGAAGGCTCAA 1378 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || | || || || || || || || ||||| || ||||| Sbjct 1377 CCTCGAGGGTTATAGTCTTCCCTGTGAGGGTCTTGACAAATATCTGCAT 1329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451682402028880