Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2636 86.0 8e-12 >seq2636 Length=44840 Score = 86.0 bits (94), Expect = 8e-12 Identities = 162/237 (68%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || || || |||||| || |||||||| ||| || || Sbjct 42546 AGCAAAGTCAGTGTGAAGCCCTTCATCACGGCTTATTAGTTCATTGCTGAATGTCAATCC 42605 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| || || ||||||||||||||||| || | ||| || || || ||||| | Sbjct 42606 CGGCATAAGCCCACGCTTCTTCAACCAGAAGATAGACGCAAACGACCCGGAAAAGAAAAC 42665 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTG---TATC 127695 |||||| || || || |||| ||||||||| | ||| | |||||| | | | Sbjct 42666 CCCCTCTACGGCAGCAAAGGCAACTAGACGCTCTGGAAAAG---TGGACTTCGAGTCACC 42722 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||| || | ||||| | ||||| |||| | ||| || | ||| || | ||| Sbjct 42723 AATCCATTTAAGTGCCCAATCAGCCTTCTTCTTCACACAAGGTAGGGTTTGTACCGC 42779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613071778602480